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A SMOTE PCA HDBSCAN approach for enhancing water quality classification in imbalanced datasets
Norashikin Nasaruddin1,2, Nurulkamal Masseran3, Wan Mohd Razi Idris4
1Department of Mathematical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, 43600, Bangi, Selangor, Malaysia. p119487@siswa.ukm.edu.my.
Scientific Reports
|April 16, 2025
Summary
This study introduces SMOTE-PCA-HDBSCAN, a novel framework to address class imbalance in water quality data. It significantly improves minority class detection while maintaining overall accuracy.
Area of Science:
- Environmental Science
- Data Science
- Machine Learning
Background:
- Class imbalance is a major challenge in water quality classification, leading to biased models.
- Existing oversampling techniques often fail to adequately address noise and improve minority class performance.
Purpose of the Study:
- To introduce and evaluate SMOTE-PCA-HDBSCAN, a novel oversampling framework for imbalanced water quality datasets.
- To demonstrate the effectiveness of the proposed method in improving minority class sensitivity and overall classification accuracy.
Main Methods:
- The SMOTE-PCA-HDBSCAN framework combines Synthetic Minority Oversampling Technique (SMOTE), Principal Component Analysis (PCA), and Hierarchical Density-Based Spatial Clustering of Applications with Noise (HDBSCAN).
- SMOTE generates synthetic samples, PCA enhances data separability, and HDBSCAN removes noise from synthetic data.
- The cleaned synthetic data is merged with the original dataset for training.
Main Results:
- SMOTE-PCA-HDBSCAN significantly improved sensitivity for minority classes (Clean: 4.76% to 28.57%; Polluted: 38.09% to 61.90%).
- The method maintained high accuracy for the majority class.
- Comparative evaluations showed superior performance over other methods like SMOTE, SMOTE-DBSCAN, and SMOTE-ENN.
Conclusions:
- SMOTE-PCA-HDBSCAN is a robust and effective method for handling class imbalance in water quality classification.
- The framework offers a valuable tool for enhancing predictive models in environmental monitoring and other imbalanced data domains.
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