Related Experiment Video
Updated: May 15, 2025

Determination of Protein-ligand Interactions Using Differential Scanning Fluorimetry
Published on: September 13, 2014
Using machine learning methods to predict the diabatic bond dissociation energy of non-heme iron complexes
Zhengwei Chen1, Miaojiong Tang2, Xiahe Chen1
1College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, China. yangyf@zjut.edu.cn.
Abstract:
Bond dissociation energy (BDE) is an important property in chemical research. In the process of non-heme iron complex catalytic reactions, diabatic BDE has a significant impact on the selectivity of halogenation and hydroxylation reactions. Measuring or calculating BDE by using traditional experimental or theoretical methods is often expensive and complex, so we propose the first application of machine learning on non-heme iron complexes to predict and rationalize the diabatic BDEs of Fe-X and Fe-OH bonds in order to assist in the study of selectivity in non-heme iron complex catalytic reactions. We built a reliable and representative dataset containing over 600 types of non-heme iron complexes and used density functional theory (DFT) to calculate nearly 900 diabatic BDE for machine learning. In terms of model training, we used 2D molecular fingerprints and 3D descriptors as inputs to train the regression model. The results indicate that the ensemble algorithm combined with Morgan fingerprints can effectively predict the diabatic BDEs of non-heme iron complexes. Using the Gradient Boosting Regressor (GBR) model and Morgan fingerprints can achieve an accurate prediction of R2 = 0.791 and the mean absolute error (MAE) = 10.23 kcal mol-1. The incorporation of 3D descriptors significantly improves the predictive performance of molecular fingerprints other than Morgan fingerprints. Notably, the SOAP descriptor effectively captures key 3D molecular information, making it particularly advantageous for predicting isomers with large ΔBDE. However, when the ΔBDE of isomers in the dataset is small, Morgan fingerprints remain the more efficient choice.
More Related Videos
06:50Author Spotlight: A Computational Approach to Decipher Amino Acid Preferences in Multispecific Protein-Protein Interactions
Published on: January 26, 2024
04:40Dynamic Light Scattering Analysis for the Determination of the Particle Size of Iron-Carbohydrate Complexes
Published on: July 7, 2023
Related Concept Videos
Colors and Magnetism
When atoms or molecules absorb light at the proper frequency, their electrons are excited to higher-energy orbitals. For many main group atoms and molecules, the absorbed photons are in the ultraviolet range of the electromagnetic spectrum, which cannot be detected by the human eye. For coordination compounds, the energy difference between the d orbitals often allows photons in the visible range to be absorbed and emitted, which is seen as colors by the human...
Crystal Field Theory - Octahedral Complexes
To explain the observed behavior of transition metal complexes (such as colors), a model involving electrostatic interactions between the electrons from the ligands and the electrons in the unhybridized d orbitals of the central metal atom has been developed. This electrostatic model is crystal field theory (CFT). It helps to understand, interpret, and predict the colors, magnetic behavior, and some structures of coordination compounds of transition metals.
CFT focuses on...
The Equilibrium Binding Constant and Binding Strength
Metal-Ligand Bonds
In these complexes, transition metals form coordinate covalent bonds, a kind of Lewis acid-base interaction in which both of the electrons in the bond are contributed by a donor (Lewis base) to an electron acceptor (Lewis acid). The Lewis acid in...
Bond Dissociation Energy and Activation Energy
Complexation Equilibria: Factors Influencing Stability of Complexes