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Mapping effective connectivity by virtually perturbing a surrogate brain
Zixiang Luo1,2, Kaining Peng1, Zhichao Liang1
1Department of Biomedical Engineering, Southern University of Science and Technology, Shenzhen, China.
Nature Methods
|April 22, 2025
Summary
This study introduces Neural Perturbational Inference (NPI), a novel framework for mapping whole-brain effective connectivity (EC). NPI accurately infers causal brain interactions using a computational surrogate, advancing neuroscience and clinical applications.
Area of Science:
- Neuroscience
- Computational Neuroscience
- Systems Neuroscience
Background:
- Effective connectivity (EC) is crucial for understanding brain function.
- Traditional EC methods are invasive or lack whole-brain coverage.
- A non-invasive method for whole-brain EC mapping is needed.
Purpose of the Study:
- To introduce Neural Perturbational Inference (NPI), a data-driven framework for whole-brain EC mapping.
- To develop a computational surrogate brain model for simulating neural dynamics.
- To enable causal inference of brain-wide interactions.
Main Methods:
- Developed an artificial neural network as a computational surrogate of the brain.
- Systematically perturbed regions in the surrogate model to analyze responses.
- Trained the network to model large-scale neural dynamics for EC inference.
Main Results:
- NPI demonstrated superiority over Granger causality and dynamic causal modeling in validation studies.
- Applied to resting-state fMRI data, NPI revealed consistent, structurally supported EC patterns.
- NPI-inferred EC closely matched real stimulation propagation patterns from evoked potential data.
Conclusions:
- NPI provides a powerful, non-invasive tool for mapping whole-brain effective connectivity.
- This framework facilitates a transition from correlational to causal understanding of brain function.
- NPI holds significant potential for neuroscience research and clinical applications.

