Related Experiment Video
Updated: May 10, 2025

Candidate Gene Testing in Clinical Cohort Studies with Multiplexed Genotyping and Mass Spectrometry
Published on: June 21, 2018
Prevalence and Genotyping of Mycobacterium avium subsp. paratuberculosis in Sheep from Inner Mongolia, China
Rong Zhang1, Yue-Rong Lv2, Bo Yang3
1Otok Banner Animal Disease Prevention and Control Center, Ordos 016100, China.
Background:
Paratuberculosis (PTB) is a chronic wasting disease mainly caused by Mycobacterium avium subsp. paratuberculosis (MAP) in ruminants. It is difficult to diagnose, prevent, treat, and eradicate, thereby causing serious economic losses to the livestock industry. Therefore, finding a detection method with high sensitivity and specificity is crucial to preventing and controlling PTB.
Methods:
A total of 1585 fresh fecal samples were collected from 12 prefectures and cities across Inner Mongolia between March 2022 and October 2024. The samples were subjected to pretreatment, followed by DNA extraction. Subsequently, MAP detection and genotyping were performed using a two-step qPCR method.
Results:
The overall prevalence of MAP in ovines was 3.34% (53/1585), with the prevalence in 12 prefectures and cities ranging from 0% (0/100) to 7.73% (15/194). In the eastern, central, and western regions, the prevalence rates were 4.74% (31/654), 3.68% (14/394), and 1.49% (8/537); in small-scale and intensive farms, they were 3.23% (22/682), and 3.56% (31/903); and in goats and sheep, they were 0.91% (2/219) and 4.98% (36/723), respectively. The overall prevalence rates of C- and S-type MAP were 2.90% (46/1585) and 0.44% (7/1585), respectively.
Conclusions:
To the best of our knowledge, this study is the first to conduct an epidemiological investigation of PTB in sheep across all nine cities and three leagues in Inner Mongolia and to perform MAP typing on a large scale. It elucidated the differences in the prevalence of PTB in different regions of Inner Mongolia and found that geographical location and sheep breed are potential risk factors for the differences in MAP prevalence. Furthermore, it has been shown that C- and S-type MAP coexist in the eastern and central regions of Inner Mongolia.
Insights
Paratuberculosis (PTB) in sheep is widespread in Inner Mongolia, with Mycobacterium avium subsp. paratuberculosis (MAP) detected in 3.34% of samples. Geographical location and breed influence MAP prevalence, with both C- and S-types coexisting.
Area of Science:
- Veterinary Epidemiology
- Microbiology
- Animal Health
Background:
- Paratuberculosis (PTB) is a chronic wasting disease in ruminants caused by Mycobacterium avium subsp. paratuberculosis (MAP).
- Effective diagnosis, prevention, and control of PTB are challenging, leading to significant economic losses in the livestock industry.
- High-sensitivity and high-specificity detection methods are crucial for managing PTB.
Purpose of the Study:
- To conduct the first large-scale epidemiological investigation of PTB in sheep across Inner Mongolia.
- To perform MAP genotyping to understand the distribution of different MAP strains.
- To identify potential risk factors associated with MAP prevalence.
Main Methods:
- Collection of 1585 fresh fecal samples from sheep across 12 prefectures and cities in Inner Mongolia (March 2022 - October 2024).
- DNA extraction from fecal samples.
- Detection and genotyping of MAP using a two-step quantitative polymerase chain reaction (qPCR) method.
Main Results:
- Overall MAP prevalence in ovine fecal samples was 3.34% (53/1585), with regional variations from 0% to 7.73%.
- Prevalence differed across geographical regions (East: 4.74%, Central: 3.68%, West: 1.49%) and farm types (small-scale: 3.23%, intensive: 3.56%).
- C-type MAP prevalence was 2.90%, and S-type MAP prevalence was 0.44%, with both types found in eastern and central regions.
Conclusions:
- This study provides the first comprehensive epidemiological data on PTB in sheep across Inner Mongolia.
- Geographical location and sheep breed are identified as potential risk factors influencing MAP prevalence.
- Coexistence of C- and S-type MAP strains in eastern and central Inner Mongolia highlights the complexity of PTB epidemiology.
Related Concept Videos
Genome-wide Association Studies-GWAS
GWAS does not require the identification of the target gene involved in...
Single Nucleotide Polymorphisms-SNPs
What is Population Genetics?

