Related Experiment Video
Updated: May 9, 2025

How to Quantify the Fraction of Photoactivated Fluorescent Proteins in Bulk and in Live Cells
Published on: January 7, 2019
Quantification of 129Xe MRI Ventilation-defect-percent Using Binary-threshold, Gaussian Linear-Binning and K-means
Eveline Durom1, Chanwoo Yang2, Ali Mozaffaripour1
1Robarts Research Institute, Western University, London, Canada (E.D., C.Y., A.M., A.M.M., G.P.); School of Biomedical Engineering, Western University, London, Canada (E.D., A.M., G.P.).
Rationale And Objectives:
Hyperpolarized 129Xe magnetic resonance imaging (MRI) provides a way to quantify ventilation heterogeneity as ventilation defect percent (VDP), calculated as the volume of unventilated lung volume normalized to the thoracic cavity volume. Currently used methods for quantifying VDP include (1) binary signal-intensity thresholds (Binary-threshold, BT), (2) Gaussian transformation of signal-intensity histogram with standard deviation thresholds or Gaussian-linear-binning (GLB), and (3) iterative centroid-based clustering of the signal-intensity histogram (k-means). These methods have not been directly compared in patients with asthma and chronic obstructive pulmonary disease (COPD), in whom ventilation defects are hallmark findings. Our objective was to quantify and compare VDP using these four different methods.
Patients And Methods:
Data from 175 participants (n=42 healthy, n=43 COPD, n=90 asthma) were retrospectively evaluated using a CNN co-registration and segmentation pipeline and GLB, GLBslice, (slice-wise evaluation of GLB) BT and k-means VDP quantification methods. Linear-regression and Bland-Altman plots were used to quantify inter-method correlations and agreement.
Results:
VDP was significantly different using GLB (Asthma: 6±9%, COPD: 7±7%, p<.001) and BT (Asthma: 6±7%, COPD: 10±8%, p<.001) methods compared to GLBslice (Asthma: 12±13%, COPD: 16±15%, p<.001) and k-means (Asthma: 12±12%, COPD: 25±17%, p<.001). VDP calculated using GLB (R2=.64, p<.001), GLBslice (R2=.84, p<.001) and BT (R2=.84, p<.001) was significantly correlated with k-means VDP. Bland-Altman plots revealed wide 95% confidence intervals of agreement for k-means with GLB/GLBslice (COPD -6%/-1%: 42%/23%; asthma -5%/-10%:16%/10%) and BT (COPD -4%:36%; asthma -6%:19%).
Conclusion:
VDP differences in patients with asthma and COPD calculated using four methods are important to consider for multi-center studies.
More Related Videos
Related Concept Videos
Quantitative Analysis
In quantitative analysis, two key measurements are made: the sample quantity and a property proportional to the amount of the analyte (the substance being analyzed). This forms the basis of the...
Numerical Calculations
The solution to a problem is obtained using different methods. While manually solving algebraic symbols is one of the most common methods, the graphical method is often preferred. Computers...
Units and Standards of Measurement
Measurements of physical quantities are...
Dimensional Analysis
Conversion Factors and Dimensional Analysis
The unit...
How Data are Classified: Numerical Data
Quantitative data may be either discrete or continuous. All quantitative data that take on only specific numerical...
SI Units: 2019 Redefinition
A standard set of units has been defined...

