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Updated: May 12, 2025

Biobank for Translational Medicine: Standard Operating Procedures for Optimal Sample Management
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Implementation of a Digital Maturity Framework for Biobanking.

Federica Rossi1, Davide Fragnito1, Antonella Cruoglio1

  • 1Istituto degli Endotipi in Oncologia, Metabolismo e Immunologia "G. Salvatore" (IEOMI), Naples, Italy.

Journal of Biomedical Informatics
|May 9, 2025
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Summary
This summary is machine-generated.

Biobanks need better digitalization for reproducible research. A new framework, BB4FAIR, assessed Italian biobanks, revealing gaps in digital consent and data annotation, crucial for FAIR data principles.

Keywords:
BBMRIBiobankingBiobanksData ManagementDigital FrameworkFAIR PrinciplesResearch Infrastructures

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Area of Science:

  • Biobanking and Research Infrastructures
  • Digitalization and Data Management
  • Reproducible Research

Background:

  • Digitalization is essential for reproducible research and FAIR data principles in biobanks.
  • Assessing biobank digitalization is complex due to regulatory and logistical factors.

Purpose of the Study:

  • To develop and pilot a quantitative framework (BB4FAIR) to assess biobank digitalization maturity.
  • To identify areas for improvement in biobanking processes to enhance data FAIRness.

Main Methods:

  • Developed the BB4FAIR framework with a survey covering IT infrastructure, personnel, and data annotation.
  • Implemented an automated R/Shiny system for response analysis and visualization.
  • Piloted the tool on 46 Italian biobanks (BBMRI.it).

Main Results:

  • Significant heterogeneity in digitalization levels across biobanks.
  • Nearly half have adequate IT infrastructure and personnel; fewer have robust data annotation.
  • Most biobanks lack digital informed consent, despite using Biobank IT Management Systems (BIMS).

Conclusions:

  • Urgent need for improved IT training and data annotation resources in BBMRI.it.
  • Targeted improvements are necessary to enhance biobank digitalization and data FAIRness.
  • Corrective actions are underway through the #NextGenerationEu "Strengthening BBMRI.it" project.