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Related Experiment Video

Updated: May 20, 2025

Quantitation of Protein Expression and Co-localization Using Multiplexed Immuno-histochemical Staining and Multispectral Imaging
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S2L-CM: Scribble-supervised nuclei segmentation in histopathology images using contrastive regularization and

Hyun-Jic Oh1, Seonghui Min1, Won-Ki Jeong1

  • 1Department of Computer Science and Engineering, College of Informatics, Korea University, 145 Anam-ro, Seongbuk-gu, Seoul, 02841, South Korea.

Computers in Biology and Medicine
|May 17, 2025
PubMed
Summary
This summary is machine-generated.

This study introduces S2L-CM, a novel framework for nuclei segmentation using scribble-based labels. It effectively generates pseudo-labels, improving deep learning model training without full ground-truth data.

Keywords:
Multiscale contrastive regularizationPixel-level multiple instance learningPseudo label supervisionWeakly supervised nuclei segmentation

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Area of Science:

  • Digital pathology
  • Computational biology
  • Medical image analysis

Background:

  • Deep learning excels in pathology nuclei segmentation but requires extensive manual labeling.
  • Supervised learning demands significant effort for ground truth data generation.
  • Weakly supervised learning offers a solution with sparse annotations but often yields lower performance.

Purpose of the Study:

  • To propose S2L-CM, a scribble-supervised nuclei segmentation framework.
  • To reduce the need for manual ground truth labels in nuclei segmentation.
  • To enhance segmentation performance using refined pseudo-labels.

Main Methods:

  • Leveraging self-generated pseudo-labels from sparse scribble annotations for model training.
  • Utilizing multiscale contrastive regularization for pseudo-label refinement.
  • Employing pixel-level multiple-instance learning to improve segmentation accuracy.

Main Results:

  • S2L-CM demonstrates effectiveness and robustness across four nuclei datasets.
  • The proposed method achieves competitive performance compared to state-of-the-art techniques.
  • Successful nuclei segmentation achieved without requiring full ground-truth labels.

Conclusions:

  • S2L-CM offers an efficient approach to nuclei segmentation by minimizing manual annotation effort.
  • The framework shows promise for practical applications in digital pathology.
  • Further research can build upon this method for advanced weakly supervised segmentation tasks.