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Updated: Sep 20, 2025

Novel RNA-Binding Proteins Isolation by the RaPID Methodology
Published on: September 30, 2016
Identification of RMP24 and RMP64, human ribonuclease MRP-specific protein components
Rui Che1, Bhoomi Mirani1, Monireh Panah1
1Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29631, USA; Clemson University Center for Human Genetics, Greenwood, SC 29646, USA.
Abstract:
Human RNase MRP is a ribonucleoprotein (RNP) enzyme that processes precursor rRNA (pre-rRNA) at ITS1 site 2 and may have additional activities. It is an endonuclease related to RNase P, which processes pre-tRNAs and pre-tRNA-like substrates. In Saccharomyces cerevisiae, these two RNPs utilize distinct catalytic RNAs with eight shared and one or two specific protein subunits. However, the human RNase MRP-specific protein subunits remain unidentified. Our genome-wide forward genetic screening identifies two poorly characterized human genes, which we name ribonuclease MRP subunit P24 (RMP24) and RMP64. We show that Rmp24 and Rmp64 are required for pre-rRNA ITS1 site 2 processing and associate with MRP RNA but are not required for RNase P activity and do not associate with RNase P-specific H1 RNA. Despite limited sequence homology, Rmp24 and Rmp64 exhibit predicted structural similarities to two RNase MRP-specific components in S. cerevisiae. Collectively, our functional screening and validation reveal two protein components unique to human nuclear RNase MRP.
Insights
Researchers identified two new proteins, RMP24 and RMP64, essential for human RNase MRP function in precursor rRNA processing. These findings reveal unique protein components of this crucial ribonucleoprotein enzyme.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- Human RNase MRP is a ribonucleoprotein (RNP) enzyme crucial for precursor rRNA (pre-rRNA) processing.
- It is related to RNase P, sharing some protein subunits but differing in catalytic RNAs and specific proteins.
- The specific protein components of human RNase MRP have remained unidentified.
Purpose of the Study:
- To identify the unique protein subunits of human RNase MRP.
- To characterize the function of these novel subunits in pre-rRNA processing.
Main Methods:
- Genome-wide forward genetic screening was employed to identify candidate genes.
- Functional assays were performed to assess the role of identified genes in pre-rRNA processing.
- Co-immunoprecipitation was used to determine protein-RNA associations.
Main Results:
- Two previously uncharacterized human genes, RMP24 and RMP64, were identified.
- RMP24 and RMP64 are essential for pre-rRNA processing at ITS1 site 2.
- These proteins associate with MRP RNA but not with RNase P-specific H1 RNA.
- RMP24 and RMP64 show predicted structural similarities to yeast RNase MRP-specific proteins.
Conclusions:
- RMP24 and RMP64 are unique protein components of human nuclear RNase MRP.
- These findings elucidate the composition of a key ribonucleoprotein enzyme involved in ribosome biogenesis.
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