Combined inhibition of KAT6A/B and Menin reverses estrogen receptor-driven gene expression programs in breast cancer
Sarah Naomi Olsen1, Bryn Anderson1, Charlie Hatton1
1Department of Pediatric Oncology, Dana-Farber Cancer Institute and Boston Children's Hospital, Boston, MA 02215, USA.
Abstract:
KAT6A is a histone acetyltransferase that is emerging as a therapeutic target in cancer, including estrogen receptor-positive (ER+) breast cancer. Here, we perform CRISPR screens to identify the chromatin adaptor Menin as a regulator of KAT6A/B inhibitor response. Co-treatment with KAT6A/B and Menin inhibitors has synergistic anti-proliferative effects in ER+, but not ER-, breast cancer lines. Our data reveal that KAT6A and Menin-KMT2A cooperatively regulate ER-driven gene expression via direct effects on ESR1 expression and co-localization at ER target genes. Combined KAT6A/B and Menin inhibition displaces KAT6A and Menin-KMT2A from promoters of ER-driven genes leading to selective RNA polymerase II chromatin loss at these loci. Importantly, combined KAT6A/B and Menin inhibition is effective in ER+ patient-derived xenograft models and in multiple models of endocrine resistance. KAT6A/B and Menin inhibitors are currently in clinical trials and have shown manageable toxicity profiles, underscoring the potential therapeutic relevance for ER+ breast cancer.
Insights
Combining KAT6A/B and Menin inhibitors shows synergistic effects against estrogen receptor-positive breast cancer. This dual inhibition targets ER-driven gene expression, offering a promising therapeutic strategy for endocrine-resistant cancers.
Area of Science:
- Oncology
- Molecular Biology
- Epigenetics
Background:
- KAT6A histone acetyltransferase is a potential therapeutic target in cancers, including ER+ breast cancer.
- Menin acts as a chromatin adaptor and its role in KAT6A/B inhibitor response is under investigation.
Purpose of the Study:
- To identify regulators of KAT6A/B inhibitor response using CRISPR screens.
- To investigate the synergistic effects of combined KAT6A/B and Menin inhibition in breast cancer.
Main Methods:
- CRISPR screening to identify chromatin adaptors.
- Co-treatment assays with KAT6A/B and Menin inhibitors.
- Analysis of gene expression and protein localization at target gene promoters.
Main Results:
- Menin was identified as a regulator of KAT6A/B inhibitor response.
- Combined KAT6A/B and Menin inhibition demonstrated synergistic anti-proliferative effects in ER+ breast cancer lines.
- This combination therapy effectively reduced ER-driven gene expression and showed efficacy in preclinical models of endocrine resistance.
Conclusions:
- KAT6A and Menin cooperatively regulate ER-driven gene expression, impacting ESR1 levels and promoter activity.
- Combined KAT6A/B and Menin inhibition offers a potential therapeutic strategy for ER+ breast cancer, including endocrine-resistant forms.
- The manageable toxicity profiles of these inhibitors in clinical trials highlight their therapeutic potential.
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