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Updated: Sep 18, 2025

Sample Preparation for Mass Spectrometry-based Identification of RNA-binding Regions
Published on: September 28, 2017
LncRNA-536 and RNA-Binding Protein RBM25 Interactions in Pulmonary Artery Smooth Muscle Cells: Implications in
Aatish Mahajan1, Sivasankar Chandran1, Ashok Kumar1
1Division of Pulmonary and Critical Care Medicine, Department of Internal Medicine, University of Kansas Medical Center.
Long noncoding RNA ENST00000495536 (lnc-536) drives pulmonary hypertension by downregulating HOXB13. Inhibiting lnc-536 in rats reversed hypertension, suggesting therapeutic potential.
Area of Science:
- Molecular Biology
- Cardiovascular Research
- RNA Biology
Background:
- Pulmonary hypertension (PH) involves abnormal smooth muscle cell proliferation.
- The role of long noncoding RNAs (lncRNAs) in PH pathogenesis is increasingly recognized.
- Understanding the molecular mechanisms underlying PH is crucial for developing effective treatments.
Purpose of the Study:
- To elucidate the mechanistic association between lnc-536 and HOXB13 in PH.
- To investigate the role of lnc-536 in regulating pulmonary arterial smooth muscle cell (PASMC) phenotype.
- To explore the potential of targeting lnc-536 for PH therapy.
Main Methods:
- In vitro studies: lnc-536 knockdown/knockin, RNA pull-down, immunoprecipitation in PASMCs.
- In vivo studies: lnc-536 antisense oligos administration in pulmonary hypertensive rats.
- Analysis of lnc-536 and HOXB13 levels in patient-derived PASMCs.
Main Results:
- Increased lnc-536 downregulates tumor suppressor HOXB13, promoting PASMC proliferation.
- lnc-536 interacts with RBM25, which sequesters SFPQ, reducing HOXB13 expression.
- Inhibition of lnc-536 in vivo reversed PH markers and increased HOXB13 expression.
- Elevated lnc-536 and reduced HOXB13 found in idiopathic PAH-PASMCs.
Conclusions:
- Lnc-536 acts as a molecular decoy, disrupting the SFPQ-HOXB13 complex and promoting PASMC hyperproliferation.
- This mechanism involves regulation of Wnt and Hippo signaling pathways in idiopathic pulmonary arterial hypertension (PAH).
- Targeting lnc-536 demonstrates therapeutic efficacy in preclinical models of PH.
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