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A Data Integration Workflow to Identify Drug Combinations Targeting Synthetic Lethal Interactions
Published on: May 27, 2021
Design of combination therapeutics from protein response to drugs in ovarian cancer cells
Alexandra Franz1,2,3, Ciyue Shen1,2,3, Fabian Coscia4
1Department of Data Science, Dana-Farber Cancer Institute, Boston, MA, 02115, USA.
Abstract:
High-grade serous ovarian cancer (HGSOC) remains the most lethal gynecologic malignancy and novel treatment approaches are needed. Here, we used unbiased quantitative protein mass spectrometry to assess the cellular response profile to drug perturbations in ovarian cancer cells for the rational design of potential combination therapies. Analysis of the perturbation profiles revealed proteins responding across several drug perturbations (called frequently responsive below) as well as drug-specific protein responses. The frequently responsive proteins included proteins that reflected general drug resistance mechanisms such as changes in drug efflux pumps. Network analysis of drug-specific protein responses revealed known and potential novel markers of resistance, which were used to rationalize the design of anti-resistance drug pairs. We experimentally tested the anti-proliferative effects of 12 of the proposed drug combinations in 6 HGSOC cell lines. Drug combinations tested with additive or synergistic effects are plausible candidates for overcoming or preventing resistance to single agents; these include several combinations that were synergistic (with PARPi, MEKi, and SRCi). Additionally, we observed 0.05-0.11 micromolar response to GPX4 inhibitors as single agents in the OVCAR-4 cell line. We propose several drug combinations as potential therapeutic candidates in ovarian cancer, as well as GPX4 inhibitors as single agents.
Insights
Researchers identified drug combinations and GPX4 inhibitors to combat high-grade serous ovarian cancer (HGSOC). These novel therapies show promise in overcoming drug resistance and improving treatment outcomes for this lethal gynecologic malignancy.
Area of Science:
- Oncology
- Proteomics
- Pharmacology
Background:
- High-grade serous ovarian cancer (HGSOC) is the deadliest gynecologic cancer, necessitating new therapeutic strategies.
- Understanding cellular responses to drug perturbations is crucial for designing effective combination therapies.
Purpose of the Study:
- To identify potential drug combinations for overcoming resistance in HGSOC using proteomic profiling.
- To evaluate the anti-proliferative effects of novel drug combinations and single agents in HGSOC cell lines.
Main Methods:
- Unbiased quantitative protein mass spectrometry was employed to analyze cellular responses to drug perturbations.
- Network analysis identified drug-specific protein responses and potential resistance markers.
- Experimental testing of 12 drug combinations and GPX4 inhibitors in six HGSOC cell lines.
Main Results:
- Proteomic profiling revealed proteins associated with general drug resistance and drug-specific responses.
- Network analysis identified novel markers for resistance, guiding the design of anti-resistance drug pairs.
- Several drug combinations demonstrated synergistic or additive anti-proliferative effects, including with PARPi, MEKi, and SRCi.
- GPX4 inhibitors showed significant single-agent activity (0.05-0.11 µM) in the OVCAR-4 cell line.
Conclusions:
- Proposed drug combinations represent potential therapeutic candidates for ovarian cancer treatment.
- GPX4 inhibitors show promise as single agents for ovarian cancer therapy.
- These findings offer novel strategies to overcome or prevent drug resistance in HGSOC.
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