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Updated: Sep 17, 2025

An Assay for Quantifying Protein-RNA Binding in Bacteria
Published on: June 12, 2019
A New Small and Resilient Nucleic Acid-Binding Protein from Nanoarchaeum equitans
Klaudia Marlicka1, Katarzyna M Serafin2, Julia A Sobieska2
1Chair of Drug and Cosmetics Biotechnology, Faculty of Chemistry, Warsaw University of Technology, ul. Noakowskiego 3, 00-664, Warsaw, Poland. Klaudia.Marlicka.dokt@pw.edu.pl.
Nucleic acid-binding proteins (NBPs) like Neq150 are crucial for gene regulation. This study identifies Neq150 as a DNA- and RNA-binding protein (DRBP) with high stability, showing potential for biotechnology applications.
Area of Science:
- Biochemistry
- Molecular Biology
- Biotechnology
Background:
- Nucleic acid-binding proteins (NBPs) regulate gene expression in all organisms.
- DNA- and RNA-binding proteins (DRBPs) are a specific class of NBPs with emerging applications.
- The archaeal protein Neq150 from *Nanoarchaeum equitans* is investigated for its binding properties.
Purpose of the Study:
- To characterize the nucleic acid binding capabilities of the Neq150 protein.
- To assess the stability and potential applications of Neq150 in biotechnology.
Main Methods:
- Recombinant Neq150 protein was purified using Immobilized Metal Affinity Chromatography (IMAC).
- Electrophoretic Mobility Shift Assay (EMSA) was employed to evaluate Neq150's binding affinity to various nucleic acids.
- Thermostability was assessed by incubating the protein at 99°C for 3 hours.
Main Results:
- Neq150 was successfully purified and confirmed to bind to both DNA and RNA, classifying it as a DRBP.
- The protein demonstrated remarkable thermostability, remaining intact after prolonged exposure to high temperatures (99°C for 3 hours).
- Neq150 exhibited significant long-term stability under diverse experimental conditions.
Conclusions:
- Neq150 is a novel DRBP with robust stability, making it a promising candidate for biotechnological and molecular biology applications.
- Its properties suggest potential use as an auxiliary protein, similar to other characterized NBPs from *N. equitans*.
- Further research into Neq150 could lead to advancements in gene editing and drug development.
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