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The potential role of cuproptosis-related genes for therapy and immunoregulation in pan-cancer
Jianpeng Zhou1, Chuanlei Wang1, Yao Zhi1
1Department of Hepatobiliary and Pancreatic Surgery I, General Surgery Center, The First Hospital of Jilin University, Changchun, Jilin Province, China.
Abstract:
The primary drawbacks of current cancer therapies are lower selectivity for cancer cells, more side effects, and obscure resistance mechanisms. Novel approaches to overcome these drawbacks comprise the utilization of ionophores and metalliferous chelators to change the concentration of trace metal elements in cancer cells. As the concept of cuproptosis emerged, it might be a novel strategy to enhance the curative effects for resistant cancer cells potentially. FDX1, LIAS, LIPT1, DLD, DLAT, PDHA1, PDHB, and SLC31A1 are the major regulators of cuproptosis. However, the expression landscape and clinical roles of these regulators remain to be addressed. This study explored the expression pattern and clinical role of these cuproptosis-related genes in pan-cancer by evaluating the association of tumor mutation burden (TMB), immune-related scores, cells in tumor microenvironment, and drug sensibility. The results displayed that the expressions of cuproptosis-related genes were significantly different in various cancer types, all cuproptosis-related gene upregulates significantly in LAML, ALL, PAAD, GBM, GBMLGG, LGG, and all significantly downregulated in cancers KIPP, WT, KIPAN, KIRC. Furthermore, the higher the level of cuproptosis-related genes expressed, the higher the survival in patients suffering from KIRC, and KIPAN increased. In addition, the expression of cuproptosis-related genes was negatively associated with immune-related scores, while SLC31A1 had a positive association with StromalScore, ImmuneScore, and EstimateScore in LAML. Importantly, the expression of cuproptosis-related genes was positively correlated with common lymphoid progenitor (CLP) cells and Th2 cells, but negatively associated with NKT cells or Th1 cells. These findings suggest that cuproptosis-related genes are dysregulated across cancer types, hold prognostic value, and may be involved in modulating the tumor immune microenvironment.
Insights
Cuproptosis regulators, like FDX1 and SLC31A1, show altered expression across many cancers, impacting patient survival and the tumor microenvironment. Understanding these genes offers new strategies for cancer therapy.
Area of Science:
- Oncology
- Molecular Biology
- Cancer Genomics
Background:
- Current cancer therapies face challenges with selectivity, side effects, and resistance.
- Trace metal element manipulation, particularly copper, is a novel therapeutic strategy.
- Cuproptosis, a copper-induced cell death pathway, presents a potential approach for overcoming cancer resistance.
Purpose of the Study:
- To investigate the expression patterns and clinical significance of cuproptosis-related genes (FDX1, LIAS, LIPT1, DLD, DLAT, PDHA1, PDHB, SLC31A1) across various cancer types.
- To analyze the association of these genes with tumor mutation burden, immune microenvironment, and drug sensitivity.
- To explore the prognostic value of cuproptosis-related genes in pan-cancer analysis.
Main Methods:
- Pan-cancer analysis of cuproptosis-related gene expression.
- Evaluation of correlations between gene expression and tumor mutation burden (TMB).
- Assessment of associations with immune-related scores, tumor-infiltrating immune cells, and drug sensitivity.
Main Results:
- Significant differential expression of cuproptosis-related genes was observed across multiple cancer types.
- Higher expression correlated with improved survival in KIRC and KIPAN cancers.
- Gene expression showed varied associations with immune scores and specific immune cell populations (CLP, Th2, NKT, Th1).
Conclusions:
- Cuproptosis-related genes are dysregulated in cancer and possess prognostic value.
- These genes may play a role in modulating the tumor immune microenvironment.
- Targeting cuproptosis offers a promising avenue for enhancing cancer treatment efficacy, especially in resistant cases.
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