Related Experiment Video
Updated: Sep 17, 2025

Laser-free Hydroxyl Radical Protein Footprinting to Perform Higher Order Structural Analysis of Proteins
Published on: June 4, 2021
Predicting intersystem crossing rate constants of alkoxy-radical pairs with structure-based descriptors and machine
Rashid R Valiev1, Rinat T Nasibullin1, Hilda Sandström2
1Department of Chemistry, University of Helsinki, P.O. Box 55 (A.I. Virtanens plats 1), FIN-00014, Finland. valievrashid@gmail.com.
None:
Peroxy radicals (RO2) are ubiquitous intermediates in many oxidation processes, especially in the atmospheric gas phase. The recombination reaction of two peroxy radicals (RO2 + R'O2) has been demonstrated to lead, via several steps, to a triplet complex of two alkoxy radicals: 3(RO˙⋯R'O˙). The different product channels of RO2 + R'O2 reactions thus correspond to different reactions of this triplet complex. Of particular interest to atmospheric chemistry is the intersystem crossing (ISC) to the singlet state, which enables the recombination of the two radicals to an ROOR' peroxide with considerably lower volatility than the original precursors. These peroxides are believed to be key contributors to the formation of secondary organic aerosol (SOA) particles, which in turn contribute to both air pollution and radiative forcing uncertainties. Developing reliable computational models for, e.g., RO2 + R'O2 branching ratios requires accurate estimates of the ISC rate constants, which can currently be obtained only from computationally expensive quantum chemistry calculations. By contrast, machine learning (ML) methods offer a faster alternative for estimating ISC rate constants. In the present work, we create a dataset with 98 082 conformations of radical pairs and their corresponding rate constants. We apply three ML models-random forest (RF), CatBoost (CB), and a neural network (NN)-to predict ISC rate constants from triplet to singlet states. Specifically, the models predict kISC(T1 → Si) for i = 1-4 and the cumulative kISC(T1 → Sn), in alkoxy radical pairs, using only molecular geometry descriptors as inputs. All ML models achieved a mean absolute error (MAE) on our test set within one order of magnitude and a coefficient of determination R2 > 0.82 for all rate constants. Overall, the ML prediction matches the quantum chemical calculations within 1-2 orders of magnitude, providing a fast and scalable alternative for quantum chemical methods for ISC rate estimation.
Related Concept Videos
Radical Reactivity: Overview
Radical Reactivity: Steric Effects
Along with electronic...
Radical Reactivity: Intramolecular vs Intermolecular
Radical Reactivity: Electrophilic Radicals
Radical Formation: Overview
Radicals from spin-paired molecules:
Radicals can be obtained from spin-paired molecules either by homolysis or electron transfer. While two radicals are formed in the former, an electron is added in the...
Radical Reactivity: Nucleophilic Radicals

