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Updated: Sep 15, 2025

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Determining the Likelihood of Variant Pathogenicity Using Amino Acid-level Signal-to-Noise Analysis of Genetic Variation
Published on: January 16, 2019
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Proteome-Wide Mendelian Randomization Identifies Candidate Causal Proteins for Cardiovascular Diseases
Chen Li1, Nicolas De Jay1, Shan-Shan Zhang2
1Informatics and Predictive Sciences Bristol-Myers Squibb Cambridge 02141 USA.
Advanced Genetics (Hoboken, N.J.)
|July 14, 2025
Summary
This study used Mendelian randomization to identify proteins causally linked to cardiovascular diseases (CVD), revealing novel drug targets. Findings advance causal human biology for developing new CVD treatments.
Area of Science:
- Genetics
- Proteomics
- Cardiovascular Disease Research
Background:
- Integrating human genomics and omics data across ancestries offers a systematic approach for identifying drug targets.
- Cardiovascular diseases (CVDs) remain a leading cause of mortality, necessitating novel therapeutic strategies.
Purpose of the Study:
- To unravel causal associations between circulating proteins and 19 CVDs using Mendelian randomization (MR).
- To identify novel protein targets for CVD drug discovery through human genetics-based evidence.
Main Methods:
- Utilized forward and reverse Mendelian randomization (MR) analyses.
- Investigated associations between 2,940 circulating proteins and 19 CVDs.
- Replicated findings using FinnGen Olink data and integrated single-cell data.
Main Results:
- Identified 218 proteins impacting risk for one or more CVDs via forward MR.
- Replicated 102 proteins associated with CVD risk in independent datasets.
- Highlighted BTN3A2 as a novel candidate for ischemic stroke and prioritized PAM and LPL for other CVDs.
Conclusions:
- The study provides robust human genetics-based evidence for novel candidate genes in CVD.
- Findings support a foundational step towards causal human biology-based drug discovery for CVD.
- Identified distinct proteomic causes and consequences of CVD through forward and reverse MR analyses.
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