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Updated: Sep 14, 2025

Automated Segmentation of Cortical Grey Matter from T1-Weighted MRI Images
Published on: January 7, 2019
Uncertainty quantification for White Matter Hyperintensity segmentation detects silent failures and improves
Ben Philps1, Maria Del C Valdés Hernández2, Chen Qin3
1School of Informatics, University of Edinburgh, Edinburgh EH8 9AB, United Kingdom.
Uncertainty quantification (UQ) in brain MRI segmentation helps identify white matter hyperintensities (WMH) missed by models. Incorporating UQ improves clinical Fazekas score classification, enhancing diagnostic accuracy for small vessel disease.
Area of Science:
- Neuroradiology
- Medical Image Analysis
- Machine Learning
Background:
- White Matter Hyperintensities (WMH) are crucial markers of small vessel disease in brain MRI, vital for clinical and research assessments.
- Accurate WMH segmentation is challenging due to variability in size, shape, borders, and overlap with other pathologies or artifacts.
Purpose of the Study:
- To evaluate uncertainty quantification (UQ) techniques for improving WMH segmentation accuracy and reliability in brain MRI.
- To assess the utility of UQ in identifying segmentation failures and enhancing downstream clinical applications, such as Fazekas score classification.
Main Methods:
- Assessed various UQ techniques for WMH segmentation across different data distributions.
- Utilized Stochastic Segmentation Networks and Deep Ensembles for segmentation.
- Developed a novel method for Fazekas score classification using WMH probability and UQ maps.
Main Results:
- UQ techniques effectively identified previously unsegmented WMH, reducing 'silent failures'.
- Stochastic Segmentation Networks with Deep Ensembles achieved superior Dice and Absolute Volume Difference % (AVD) scores.
- Integrating UQ information improved Fazekas score classification balanced accuracy and calibration, outperforming models without UQ.
Conclusions:
- UQ is valuable for improving the robustness and reliability of WMH segmentation in brain MRI.
- UQ-enhanced spatial features significantly boost the performance of clinical scoring systems like the Fazekas score.
- Stochastic UQ methods with diverse samples can detect and mitigate poor quality segmentations.
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