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A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
Published on: September 20, 2018
Artificial intelligence in healthcare text processing: a review applied to named entity recognition
Samuel Santana de Almeida1, Raphael Silva Fontes2, Luca Pareja Credidio Freire Alves3
1Postgraduate Program in Computer Science (PROCC), Federal University of Sergipe, São Cristóvão, Brazil.
Advanced language models like BERT significantly improve Named Entity Recognition (NER) in medical texts, achieving over 97% accuracy. This breakthrough enhances information retrieval and clinical decision support systems in healthcare.
Area of Science:
- Natural Language Processing (NLP)
- Medical Informatics
- Artificial Intelligence in Healthcare
Background:
- Traditional methods (rule-based, word embeddings, sequence tagging) struggle with medical text complexity, variability, and data requirements.
- Named Entity Recognition (NER) is crucial for analyzing healthcare texts, identifying medical conditions and drug names.
- Effective NER supports information retrieval, personalized medicine, and clinical decision support.
Purpose of the Study:
- To systematically map and evaluate advanced language models, particularly transformer-based models like BERT, for medical NER.
- To compare the performance of transformer models against traditional and hybrid approaches in processing complex medical texts.
- To analyze the global contributions to this research area and discuss implications for healthcare systems.
Main Methods:
- Conducted a systematic mapping review focusing on transformer-based language models (e.g., BERT) for medical NER.
- Analyzed the models' ability to capture semantic dependencies and linguistic nuances in medical texts.
- Compared performance metrics (e.g., F1 scores) with traditional methods like CNNs and RNNs.
Main Results:
- Transformer-based models, especially BERT and ClinicalBERT, consistently achieve high performance, with F1 scores often exceeding 97%.
- These advanced models significantly outperform traditional and hybrid methods in medical NER tasks.
- China and the United States are leading contributors to research in this domain.
Conclusions:
- Transformer-based models represent a significant advancement in medical NER, offering superior accuracy and flexibility.
- The findings highlight the potential for integrating advanced NER technologies into healthcare systems, such as Brazil's SUS.
- Continuous updates on NLP advancements are vital for maximizing the relevance and application of NER in healthcare.
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