Related Experiment Video
Updated: Sep 14, 2025
Deep Vascular Imaging in the Eye with Flow-Enhanced Ultrasound
Published on: October 4, 2021
VascX Models: Deep Ensembles for Retinal Vascular Analysis From Color Fundus Images
Jose Vargas Quiros1,2, Bart Liefers1,2, Karin A van Garderen1,2
1Department of Ophthalmology, Erasmus University Medical Center, Rotterdam, the Netherlands.
Purpose:
To present and validate deep learning model ensembles (VascX) for vessel, artery-vein, optic disc segmentation, and fovea localization for color fundus images (CFIs). VascX preprocessing and inference code and model weights were made publicly available to facilitate research on retinal vasculature.
Methods:
For model training, we combined over 15 published annotated datasets with CFIs from Dutch studies (mainly the Rotterdam Study). This resulted in diverse development sets with a variety of patient characteristics and imaging conditions. We trained UNet model ensembles using a new, more robust preprocessing algorithm and strong data augmentations. We compared VascX segmentation performance (Dice) to models with publicly available weights: AutoMorph and LittleWNet. We compared the quality of VascX (and previous models') features by measuring agreement (mean absolute error [MAE] and Pearson correlation) with features extracted from grader segmentations.
Results:
Dice scores revealed better performance from VascX across most datasets evaluated, especially for artery-vein and optic disc segmentation. VascX performed more consistently as the quality of the images decreased and for both disc and fovea-centered images. These improvements translated into higher-quality vascular features. Of 24 features evaluated, 14 showed a significant improvement in MAE when compared to AutoMorph and 23 when compared to LWNet. VascX had the highest correlations with ground-truth features in all but two cases.
Conclusions:
VascX models perform well across a variety of conditions, likely due to the size and diversity of our development sets. VascX represents an important improvement in segmentation quality that translates into better vascular features to support more robust analyses of the retinal vasculature.
Translational Relevance:
By making VascX public, we aim to facilitate and improve research linking retinal vascular biomarkers to ophthalmic and systemic conditions, relevant for the detection, prevention, and monitoring of disease.
