Large-Scale Calculations by Integrating the Fragmentation Approach With Neural Network Potentials
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Updated: Sep 14, 2025

Computational Modeling of Retinal Neurons for Visual Prosthesis Research - Fundamental Approaches
Published on: June 21, 2022
Rei Oshima1, Mikito Fujinami2, Yuya Nakajima3
1Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University, Tokyo, Japan.
Abstract:
A fragmentation method is introduced to enable large-scale molecular simulations using neural network potentials (NNPs). The method partitions a system into cube-shaped fragments and reconstructs the total energy using a many-body expansion formalism with a distance-based cut-off approximation. Validation with Au, NaCl, diamond, H2O, and graphite crystals demonstrated that including three-body interactions with 26 neighboring fragments reduces per-atom energy error to within 0.04 eV. This approach enables simulations of systems with up to 1 million atoms, surpassing conventional NNP limits. The scaling exponent for three-body calculations remains below 1.64, suggesting feasibility for even larger-scale applications.
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