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Updated: Sep 13, 2025

Intracellular Phosphoflow Cytometry of Acute Myeloid Leukemia Patient-Derived Xenotransplants
Published on: June 6, 2025
Targeting HASPIN kinase disrupts SR protein-mediated RNA splicing and synergizes with BCL-2 inhibitor venetoclax in
Mengdan Liu1,2,3, Ming Yan1,2, Amanda G Davis1,2
1Moores Cancer Center, University of California San Diego, La Jolla, CA.
Abstract:
Acute myeloid leukemia (AML) is a blood cancer complicated by acquired drug resistance, disease relapse, and low overall survival rates. Combination therapies using multiple targeted inhibitors have been effective in treating patients with AML. However, combination treatments are limited by the number of usable targets and our ability to create rational pairings using complimentary molecular mechanisms. Here, we used a human kinase domain-targeted CRISPR screen to identify histone H3-associated protein (HASPIN) kinase as a significant, understudied dependency in AML. HASPIN depletion significantly reduced growth rate, induced a cell cycle arrest, and dysregulated transcription in AML. A proteomics data mining study characterized serine and arginine repeat enriched splicing factors (SR proteins) as a major category of HASPIN kinase substrates and highlighted the role of HASPIN as a splicing regulatory kinase. Accordingly, HASPIN depletion strongly dysregulated splicing in AML cells. HASPIN inhibitor CHR-6494 effectively reduced cell viability across AML subtypes while sparing healthy cells. Furthermore, a novel combination therapy consisting of CHR-6494 and B-cell lymphoma 2 (BCL-2) inhibitor venetoclax synergistically reduced AML cell viability and resensitized venetoclax-resistant AMLs to treatment. Our study presents HASPIN kinase as a novel therapeutic target for AML, underscores an underappreciated role of HASPIN in splicing regulation, and proposes a viable combination treatment for clinical testing.
Insights
Histone H3-associated protein (HASPIN) kinase is a novel therapeutic target for acute myeloid leukemia (AML). Targeting HASPIN with CHR-6494 and venetoclax shows synergistic effects and overcomes drug resistance in AML.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Acute myeloid leukemia (AML) presents challenges due to drug resistance, relapse, and poor survival rates.
- Combination therapies are effective but limited by target availability and rational pairing strategies.
- Identifying novel dependencies in AML is crucial for developing new treatments.
Purpose of the Study:
- To identify novel therapeutic targets in AML using a kinase-focused CRISPR screen.
- To investigate the role of HASPIN kinase in AML pathogenesis and splicing regulation.
- To evaluate the efficacy of a HASPIN inhibitor, CHR-6494, alone and in combination with venetoclax for AML treatment.
Main Methods:
- A human kinase domain-targeted CRISPR screen was employed to identify AML dependencies.
- Proteomics data mining was used to characterize HASPIN kinase substrates, particularly SR proteins.
- The effects of HASPIN depletion and CHR-6494 treatment on AML cell viability, cell cycle, and splicing were assessed.
- Combination therapy with CHR-6494 and venetoclax was evaluated in AML cell models, including venetoclax-resistant lines.
Main Results:
- HASPIN kinase was identified as a significant dependency in AML, with its depletion impairing growth and altering transcription.
- HASPIN was characterized as a splicing regulatory kinase, and its inhibition dysregulated splicing in AML cells.
- CHR-6494 demonstrated efficacy in reducing AML cell viability across subtypes while sparing healthy cells.
- The combination of CHR-6494 and venetoclax exhibited synergistic effects, reducing AML cell viability and overcoming venetoclax resistance.
Conclusions:
- HASPIN kinase represents a novel therapeutic target for AML.
- HASPIN plays an underappreciated role in splicing regulation within AML.
- A combination therapy of CHR-6494 and venetoclax offers a promising strategy for clinical testing in AML, including resistant cases.
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