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Protic small molecule bioregulators.
Amanda G Davis1, Michael D Pluth1
1Department of Chemistry and Biochemistry, Materials Science Institute, Knight Campus for Accelerating Scientific Impact, Institute of Molecular Biology, 1253 University of Oregon, Eugene, Oregon, 97403, United States.
Small molecule gases like nitric oxide (NO) and hydrogen sulfide (H2S) are key bioregulators. A new classification, protic small molecule bioregulators (PSMBs), highlights how protonation state influences their diverse biological functions.
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Area of Science:
- Biochemistry
- Molecular Biology
- Chemical Biology
Background:
- Small molecule gases, including nitric oxide (NO), carbon monoxide (CO), and hydrogen sulfide (H2S), function as endogenous signaling molecules with critical physiological roles.
- These molecules, often termed 'gasotransmitters,' are part of a broader group of small molecule bioregulators (SMBs) essential for life across all biological kingdoms.
- A key characteristic of many SMBs, regardless of their gaseous state, is their signaling potential, which is intricately linked to protonation-dependent chemical speciation.
Purpose of the Study:
- To introduce and define a new cross-cutting classification: protic small molecule bioregulators (PSMBs).
- To describe molecules whose biological function and reactivity are modulated by their protonation state.
- To consolidate understanding of diverse signaling molecules under a unified chemical characteristic.
Main Methods:
- Literature review and conceptual synthesis.
- Analysis of chemical speciation and its impact on biological activity.
- Examination of evolutionary origins, biosynthesis, and functional crosstalk of PSMBs.
Main Results:
- Proposes the classification of protic small molecule bioregulators (PSMBs) encompassing gasotransmitters and other species like SNO-, SSNO-, SO42-, ONOO-, NO2-, SCN-, and OCl-.
- Demonstrates that protonation state dictates membrane permeability, nucleophilicity, redox activity, and metal-center interactions.
- Highlights the roles of PSMBs in redox signaling, post-translational modifications, and mitochondrial regulation.
Conclusions:
- The classification of PSMBs provides a unifying framework based on protonation-dependent chemical characteristics, rather than solely the gaseous state.
- This reframing acknowledges shared chemical principles driving the unique biological chemistry and regulation of these vital signaling molecules.
- Understanding PSMBs enhances insights into their evolutionary origins, biosynthesis, and complex crosstalk in physiological and pathological processes.