Related Experiment Video
Updated: Sep 13, 2025

12:28
Bacterial Inner-membrane Display for Screening a Library of Antibody Fragments
Published on: October 15, 2016
11.6K
The Role of MegaMolecule Antibody Structure in Internalization and Signaling
Daniel J Sykora1, Sraeyes Sridhar1, Justin A Modica1
1Department of Biomedical Engineering, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208, United States.
ACS Chemical Biology
|July 30, 2025
Summary
This study synthesized 26 megamolecule antibody scaffolds targeting HER2 (ERBB2). Biparatopic scaffolds enhanced HER2 internalization, demonstrating the megamolecule approach
Area of Science:
- Biotechnology
- Molecular Biology
- Immunology
Background:
- The human epidermal growth factor receptor 2 (HER2/ERBB2) is a key target in cancer therapy.
- Antibody-based therapeutics, like trastuzumab, are crucial for HER2-targeted treatments.
- Developing novel antibody scaffolds with enhanced properties is essential for improving therapeutic outcomes.
Purpose of the Study:
- To synthesize and characterize megamolecule-based antibody scaffolds targeting HER2.
- To compare the biological activities of these novel scaffolds with the parent monoclonal antibody trastuzumab.
- To investigate the impact of scaffold valency and epitope targeting on HER2-mediated cellular processes.
Main Methods:
- Synthesis of 26 megamolecule antibody scaffolds with varying valencies (mono-, bi-, trivalent) and domain types (Fab, nanobody).
- Assessment of cell binding, internalization rates, and cytotoxicity of the scaffolds compared to trastuzumab.
- Evaluation of HER2 epitope targeting effects using biparatopic scaffolds.
Main Results:
- Scaffold valency modulation showed modest effects on binding efficiency and no significant increase in internalization rate.
- Biparatopic scaffolds targeting multiple HER2 epitopes significantly increased internalization rates (approx. 3-fold) compared to trastuzumab.
- Scaffold valency did not impact the inhibition of cell proliferation, while biparatopic scaffolds showed variable effects on proliferation.
Conclusions:
- The megamolecule approach enables the generation of diverse, structurally defined antibody mimics for HER2 targeting.
- Scaffold structural characteristics, particularly biparatopic targeting, critically influence biological activities like internalization and proliferation.
- Novel antibody scaffolds offer potential for developing advanced HER2-targeted therapies with modulated cellular responses.
Related Concept Videos
Antibody Structure
61.3K
Overview
Antibodies, also known as immunoglobulins (Ig), are essential players of the adaptive immune system. These antigen-binding proteins are produced by B cells and make up 20 percent of the total blood plasma by weight. In mammals, antibodies fall into five different classes, which each elicits a different biological response upon antigen binding.
The Y-Shaped Structure of Antibodies Consists of Four Polypeptide Chains
Antibodies consist of four polypeptide chains: two identical heavy...
Antibodies, also known as immunoglobulins (Ig), are essential players of the adaptive immune system. These antigen-binding proteins are produced by B cells and make up 20 percent of the total blood plasma by weight. In mammals, antibodies fall into five different classes, which each elicits a different biological response upon antigen binding.
The Y-Shaped Structure of Antibodies Consists of Four Polypeptide Chains
Antibodies consist of four polypeptide chains: two identical heavy...
61.3K
Assembly of Signaling Complexes
5.9K
Multiprotein signaling complexes are formed in a dynamic process involving protein-protein interactions at the cytoplasmic domain of transmembrane receptors or enzymatic and non-enzymatic proteins associated with the receptor. These complexes ensure the activation and propagation of intracellular signals that regulate cell functions.
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
Interaction domains in cell signaling
Interaction domains recognize exposed features of their binding partners containing post-translationally modified sequences,...
5.9K
Antibody Structure and Classes
4.2K
Antibodies, also known as immunoglobulins, are produced by B cells in response to foreign substances, such as bacteria and viruses. These proteins are critical for recognizing and neutralizing these substances, protecting the body from potential harm.
The basic structure of an antibody consists of four protein chains: two identical heavy chains and two identical light chains. These chains are held together by disulfide bonds and other non-covalent interactions, forming a Y-shaped structure.
The basic structure of an antibody consists of four protein chains: two identical heavy chains and two identical light chains. These chains are held together by disulfide bonds and other non-covalent interactions, forming a Y-shaped structure.
4.2K
Receptor-mediated Endocytosis
6.4K
Receptor-mediated endocytosis is when bulk amounts of specific molecules are imported into a cell after binding to cell surface receptors. The molecules bound to these receptors are taken into the cell through inward folding of the cell surface membrane, which is eventually pinched off into a vesicle within the cell. Structural proteins, such as clathrin, coat the budding vesicle.
Clathrin-Mediated Endocytosis of LDL
One well-characterized example of receptor-mediated endocytosis is the...
Clathrin-Mediated Endocytosis of LDL
One well-characterized example of receptor-mediated endocytosis is the...
6.4K
Activation of Integrins
3.6K
Integrins bind ligands and transmit information from outside the cell to inside or vice-versa through an "outside-in signaling" or "inside-out signaling."
In "outside-in signaling," external factors in the extracellular space bind to exposed ligand binding sites on integrins. This causes the inactive protein to undergo a conformational change to become active. Integrins are often clustered on the cell membrane. Repetitive and regularly spaced ligand binding...
In "outside-in signaling," external factors in the extracellular space bind to exposed ligand binding sites on integrins. This causes the inactive protein to undergo a conformational change to become active. Integrins are often clustered on the cell membrane. Repetitive and regularly spaced ligand binding...
3.6K
Immunoglobulin-like Cell Adhesion Molecules
3.4K
Immunoglobulin-like cell adhesion molecules or Ig-CAMs are a versatile group of cell surface glycoproteins belonging to the immunoglobulin protein superfamily. Ig-CAMs possess the characteristic immunoglobulin protein domains and other domains such as the fibronectin type III domain. The Ig domains are glycosylated to varying degrees in different Ig-CAMs.
Ig-CAMs exhibit either homophilic binding (to other Ig-CAMs) or heterophilic binding (to other ligands such as integrins). While most Ig-CAMs...
Ig-CAMs exhibit either homophilic binding (to other Ig-CAMs) or heterophilic binding (to other ligands such as integrins). While most Ig-CAMs...
3.4K

