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Updated: Sep 12, 2025

Spatial Separation of Molecular Conformers and Clusters
Published on: January 9, 2014
Isolation of a Transition-State Geometry via Intermolecular Stabilization in the Solid State
Yusuke Ishigaki1, Saki Kikuchi1, Tomoki Tadokoro1
1Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan.
None:
Conformers can interconvert when the transition state lies sufficiently low in energy. Nevertheless, the transition-state geometry is minimally populated or intrinsically unpopulated in solution, making its isolation in the solid state extremely challenging. A tetraaza derivative of anthraquinodimethane bearing vicinal dimethyl groups exhibits high conformational flexibility. Owing to the very small energy difference between the twisted form and the stable folded conformer, the twisted form was successfully isolated by recrystallization and structurally characterized by single-crystal X-ray analysis, despite being computationally identified as the transition-state geometry for the ring-flip motion of the folded form. The stabilization of the twisted form is attributed to the formation of a one-dimensional columnar stack, accompanied by π-π and C-H···π interactions.
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