Single-cell RNA and bulk sequencing analysis reveals that formononetin inhibits GTSF1 to exert anti-osteosarcoma

Tianyu Xie1, Jiming Liang2, Chengsen Lin3

  • 1Department of Traumatic Orthopaedic, The First Affiliated Hospital of Guangxi Medical University, 530021 Nanning, China.

APL Bioengineering
|August 11, 2025
PubMed

Insights

Formononetin (FMN) shows promise as an osteosarcoma (OS) treatment by inhibiting tumor growth and promoting cell death. This natural compound works by down-regulating GTSF1 expression, offering a new therapeutic avenue for this challenging bone cancer.

Area of Science:

  • Oncology
  • Molecular Biology
  • Pharmacology

Background:

  • Osteosarcoma (OS) is the most common primary malignant bone tumor.
  • OS is characterized by drug resistance and poor prognosis, necessitating novel therapeutic agents.
  • Formononetin (FMN), a natural product, has demonstrated anti-tumor properties, but its role in OS was previously unknown.

Purpose of the Study:

  • To investigate the anti-tumor effects of Formononetin (FMN) on osteosarcoma (OS).
  • To elucidate the underlying mechanisms of FMN's action in OS.
  • To evaluate FMN as a potential therapeutic agent for OS.

Main Methods:

  • Established an OS patient-derived xenograft model.
  • Performed bulk transcriptome sequencing and analyzed OS single-cell RNA sequencing (scRNA-seq) data.
  • Utilized qRT-PCR and IHC for gene expression analysis; conducted in vitro experiments.

Main Results:

  • GTSF1 was found to be up-regulated in OS and down-regulated following FMN intervention.
  • FMN treatment effectively promoted apoptosis and suppressed proliferation, migration, and invasion of OS cells in vitro.
  • GTSF1 expression was significantly up-regulated in OS cells, while FMN expression was down-regulated both in vitro and in vivo.

Conclusions:

  • Formononetin (FMN) exerts anti-osteosarcoma (OS) effects by down-regulating GTSF1 expression.
  • FMN effectively promotes OS cell apoptosis and inhibits proliferation, migration, and invasion.
  • FMN represents a promising therapeutic drug candidate for osteosarcoma treatment.

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