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Comparing the carbon footprint of fMRI data processing and analysis approaches
Nicholas E Souter1, Chris Racey1,2, Nikhil Bhagwat3
1School of Psychology, University of Sussex, Brighton, United Kingdom.
Imaging Neuroscience (Cambridge, Mass.)
|August 13, 2025
Summary
fMRIPrep has a significantly higher carbon footprint than FSL and SPM. While fMRIPrep offers slightly better statistical sensitivity, researchers should balance computational cost with scientific output for neuroimaging analysis.
Area of Science:
- Neuroimaging
- Computational Neuroscience
- Environmental Science
Background:
- Functional magnetic resonance imaging (fMRI) analysis involves computationally intensive preprocessing and statistical analysis.
- Software packages like FSL, SPM, and fMRIPrep are commonly used for fMRI data processing.
- The environmental impact, specifically carbon emissions, of these software packages is not well understood.
Purpose of the Study:
- To compare the carbon emissions associated with preprocessing and statistical analysis of fMRI data across FSL, SPM, and fMRIPrep.
- To evaluate the scientific performance, in terms of statistical sensitivity, of each software package.
- To provide guidance for researchers in selecting fMRI software based on both environmental impact and analytical performance.
Main Methods:
- Utilized an existing open-access fMRI dataset for comparative analysis.
- Quantified and compared the carbon emissions generated by FSL, SPM, and fMRIPrep during data processing.
- Assessed the statistical sensitivity of each package to detect brain activation, considering regional variations.
Main Results:
- fMRIPrep exhibited substantially higher carbon emissions, approximately 30x that of FSL and 23x that of SPM.
- fMRIPrep demonstrated slightly superior statistical sensitivity compared to FSL and SPM.
- FSL outperformed SPM in statistical sensitivity, though performance patterns varied across different brain regions.
Conclusions:
- Researchers must consider the substantial carbon footprint of fMRIPrep when choosing neuroimaging software.
- A trade-off exists between the computational cost (carbon emissions) and the scientific performance of fMRI analysis tools.
- Future development and usage of fMRI software should prioritize energy efficiency and minimize unnecessary computational demands while ensuring high-quality results.

