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Fully Automated Tooth Segmentation and Labeling for Both Full- and Partial-Arch Intraoral Scans Using Deep Learning
Lingyun Cao1, Niels van Nistelrooij2, Jiaqi Liu3
1Department of Dentistry, Research Institute for Medical Innovation, Radboud University Medical Center, Nijmegen, The Netherlands.
International Dental Journal
|August 15, 2025
Summary
A new deep learning model automates tooth segmentation and labeling for both full- and partial-arch intraoral scans (IOSs). This advanced AI tool achieves high accuracy, improving digital dental workflows.
Area of Science:
- Artificial Intelligence in Dentistry
- Medical Imaging Analysis
- Digital Dentistry
Background:
- Partial-arch intraoral scans (IOSs) are crucial in clinical dentistry but pose challenges for existing tooth segmentation algorithms.
- Current algorithms often perform poorly on partial-arch data, limiting their clinical applicability.
Purpose of the Study:
- To develop a fully automated deep learning (DL) model for precise tooth segmentation and labeling on both full- and partial-arch IOSs.
- To enhance the accuracy and reliability of AI in analyzing diverse intraoral scan data.
Main Methods:
- A two-stage DL model (ToothInstanceNet) was developed, incorporating artificial partial-arch IOSs, a DL-based alignment module, and FDI-aware postprocessing.
- The model was trained on 600 IOSs (300 full-arch, 300 partial-arch) and validated using 5-fold cross-validation and the public Teeth3DS dataset.
Main Results:
- The model achieved high performance metrics, including F1-scores of 0.9908 (full-arch) and 0.9884 (partial-arch), and Dice scores of 0.9819 and 0.9862, respectively.
- Superior performance was demonstrated in the 3DTeethSeg challenge (score = 0.9870).
- Analysis revealed correlations between model errors and specific dental conditions like residual roots and missing teeth.
Conclusions:
- The study presents the first fully automated method for tooth segmentation and FDI labeling applicable to both full- and partial-arch IOSs.
- The model's high accuracy indicates its potential for seamless integration into clinical dental workflows.
- This advancement facilitates tooth identification and supports automated downstream applications in digital dentistry.

