Related Experiment Video
Updated: Sep 10, 2025

Probing Structural and Dynamic Properties of Trafficking Subcellular Nanostructures by Spatiotemporal Fluctuation Spectroscopy
Published on: August 16, 2021
Measuring Molecular Mass Densities at Subcellular Resolution Using Optical Diffraction Tomography.
Kyoohyun Kim1,2, Abin Biswas1,2,3, Jochen Guck4,5
1Max Planck Institute for the Science of Light, Erlangen, Germany.
Optical diffraction tomography (ODT) enables precise, label-free measurement of biological mass density. This technique offers new insights into cellular processes and disease states by quantifying density distribution in cells and subcellular structures.
Area of Science:
- Biophysics
- Cell Biology
- Biophotonics
Background:
- Biological systems precisely regulate mass density and volume.
- Mass density is crucial for cellular functions like growth and differentiation.
- Deviations in density homeostasis are linked to senescence and disease.
Purpose of the Study:
- To provide a comprehensive guide for implementing optical diffraction tomography (ODT).
- To enable high-resolution, label-free quantification of mass density distribution in biological systems.
- To offer insights into biophysical properties of cells and subcellular structures.
Main Methods:
- Utilizing optical diffraction tomography (ODT) for refractive index (RI) measurements.
- Detailing optical setups and optimizing tomography acquisition.
- Presenting sample preparation protocols for in vivo and in vitro biological samples.
Main Results:
- Demonstrated ODT's capability for label-free, high-resolution density quantification.
- Provided guidance on image acquisition and data analysis for biological samples.
- Addressed challenges in relating RI to mass density in complex biological substances.
Conclusions:
- ODT is a powerful tool for quantitative mass density characterization in biological systems.
- The presented guide facilitates the application of ODT in diverse biological research.
- Strategies are offered to overcome limitations in RI-based density measurements.
Related Concept Videos
Electron Microscope Tomography and Single-particle Reconstruction
Electron Tomography
Electron tomography can be performed either in TEM or STEM (scanning transmission...
X-ray Diffraction of Biological Samples
According to Bragg's law, when X-rays strike the sample positioned on a stage, the rays are scattered by the electron clouds around the sample atoms. The X-ray diffraction or scattering is caused by constructive interference of the X-ray waves that reflect off the internal...
Protein Dynamics in Living Cells
Fluorescent recovery after photobleaching (FRAP) is a fluorescent-protein-based detection technique used to quantify protein movement rates within the cell. This method exposes a small portion of the cell to an intense laser beam. The laser beam causes permanent photobleaching of the fluorophore-tagged proteins in the exposed region. As the bleached...

