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Updated: Sep 10, 2025

A Metadata Extraction Approach for Clinical Case Reports to Enable Advanced Understanding of Biomedical Concepts
Published on: September 20, 2018
Sentence-Aligned Simplification of Biomedical Abstracts
Brian Ondov1, Dina Demner-Fushman2
1Yale School of Medicine, 333 Cedar St, New Haven, CT 06510, USA.
Abstract:
The availability of biomedical abstracts in online databases could improve health literacy and drive more informed choices. However, the technical language of these documents makes them inaccessible to healthcare consumers, causing disengagement, frustration and potential misuse. In this work we explore adapting foundation language models to the Plain Language Adaptation of Biomedical Abstracts benchmark. This task is challenging because it requires sentence-by-sentence simplifications, but entire abstracts must also be simplified cohesively. We present a sentence-wise autoregressive approach and report experiments with this technique in both zero-shot and fine-tuned settings, using both proprietary and open-source models. We also introduce a stochastic regularization technique to encourage recovery from source-copying during autoregressive inference. Our best-performing model achieves a 32 point increase in SARI and 6 point increase in BERTscore over the reported state-of-the-art. This also surpasses performance of recent open-domain and biomedical sentence simplification models on this task. Further, in manual evaluation, models achieve factual accuracy comparable to human-level, with simplicity close to that of humans. Abstracts simplified by these models could unlock a massive source of health information while retaining clear provenance for each statement to enhance trustworthiness.
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