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Analyzing SARS-CoV-2 case numbers and clustering to predict a nursing home outbreak
Yasin Abul1,2,3, Kevin McConeghy4, Frank DeVone4
1Center of Innovation in Long Term Services and Supports, Providence VA Medical Center, Providence, RI, USA. yasin_abul@brown.edu.
Early clusters of COVID-19 cases in nursing homes strongly predict larger outbreaks. Rapid detection and intervention are crucial for controlling respiratory virus spread in these vulnerable settings.
Area of Science:
- Infectious Disease Epidemiology
- Geriatric Care
- Public Health Surveillance
Background:
- The COVID-19 pandemic severely impacted nursing homes, necessitating improved strategies for controlling infectious disease outbreaks.
- Effective early detection and intervention are critical for mitigating the spread of respiratory viruses in long-term care facilities.
Purpose of the Study:
- To identify early predictors of SARS-CoV-2 (the virus that causes COVID-19) outbreaks in nursing homes.
- To analyze the association between initial case counts and subsequent infections within a two-week period.
Main Methods:
- Analysis of twice-weekly PCR surveillance data from 134 Veteran Affairs Community Living Centers (December 2021-June 2022).
- Evaluation of neighborhood ward-level case counts and their correlation with new infections.
- Inclusion of data from 16,353 residents, with 1,868 infections identified.
Main Results:
- Nursing home units with no initial cases had an 87.49% chance of remaining case-free.
- Units with four or more initial cases had a 38.5% probability of experiencing four or more additional cases.
- Early case clusters were identified as strong predictors of larger subsequent outbreaks.
Conclusions:
- The presence of early case clusters is a significant indicator of impending larger outbreaks in nursing homes.
- Findings emphasize the importance of rapid diagnostic testing and prompt intervention to prevent widespread transmission.
- The study provides a framework for refining outbreak definitions and enhancing infection control strategies for respiratory viruses in long-term care settings.
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