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Targeted DNA Methylation Analysis by Next-generation Sequencing
Published on: February 24, 2015
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Systems Age: a single blood methylation test to quantify aging heterogeneity across 11 physiological systems
Raghav Sehgal1, Yaroslav Markov1, Chenxi Qin2
1Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.
Nature Aging
|September 15, 2025
Summary
New DNA methylation clocks assess aging across 11 physiological systems, offering a detailed view beyond single-point estimates. This systems-based approach identifies distinct aging subtypes and improves disease prediction.
Area of Science:
- Biogerontology
- Epigenetics
- Systems Biology
Background:
- Aging varies significantly between individuals and physiological systems.
- Existing epigenetic clocks typically provide a single age estimate, neglecting within-person variability.
- A more granular assessment of aging across different bodily systems is needed.
Purpose of the Study:
- To develop novel DNA methylation clocks capable of measuring aging across 11 distinct physiological systems.
- To integrate machine learning with clinical data for improved aging assessment.
- To identify distinct biological aging subtypes and their associated health risks.
Main Methods:
- Development of systems-based DNA methylation clocks for 11 physiological systems (Heart, Lung, Kidney, Liver, Brain, Immune, Inflammatory, Blood, Musculoskeletal, Hormone, Metabolic).
- Utilized data from a single blood draw.
- Integrated supervised and unsupervised machine learning with clinical biomarkers, functional assessments, and mortality risk data.
Main Results:
- System-specific aging scores were derived, outperforming global clocks in predicting diseases and aging phenotypes.
- A composite Systems Age score was created to reflect overall multisystem aging.
- Clustering revealed distinct biological aging subtypes associated with unique health decline and disease risk patterns.
Conclusions:
- The developed framework provides a more granular and clinically relevant assessment of biological aging.
- This approach enables personalized monitoring and targeted interventions for system-specific aging processes.
- Systems-based epigenetic clocks offer a comprehensive view of aging, accounting for individual variability across physiological systems.

