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Matrin-3 forms spherical and wormlike assemblies that are modulated by RNA binding and ALS/FTD-associated mutations
Macy L Sprunger1, Min Kyung Shinn2, Sabrina K Talir1
1Department of Chemistry, Washington University, St. Louis, MO 63130, USA.
Abstract:
Matrin-3 (MATR3) is an RNA-binding protein (RBP) that is associated with familial amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). MATR3 features two RNA recognition motifs, two zinc-finger motifs, and four intrinsically disordered regions. Here, we report that human MATR3 associates with itself to form nanoscale spherical assemblies at ultralow protein concentrations. Through concentration-dependent associations, the spheres, which are 20-30 nm in diameter, transition into wormlike assemblies. These observations are reminiscent of sphere-to-worm transitions and micellization of amphiphilic molecules. Using computations and experiments, we discovered that the pattern of inter-domain attractions and repulsions gives MATR3 an inverse bolaamphiphile-like architecture that explains the concentration-dependent assembly characteristics. RNA binding causes shortening of wormlike assemblies of MATR3, whereas ALS/FTD-associated mutations render MATR3 assemblies less responsive to modulation by RNA. Overall, our findings highlight the unique assemblies formed by MATR3 while also showing how RNA-dependent interactions and ALS/FTD-associated mutations modulate the assemblies.
Insights
Matrin-3 (MATR3), an RNA-binding protein linked to ALS/FTD, forms unique nanoscale assemblies. Its structure drives concentration-dependent sphere-to-worm transitions, modulated by RNA and disease mutations.
Area of Science:
- Biochemistry
- Molecular Biology
- Neuroscience
Background:
- Matrin-3 (MATR3) is an RNA-binding protein (RBP) implicated in familial amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD).
- MATR3 possesses distinct structural domains, including RNA recognition motifs, zinc-finger motifs, and intrinsically disordered regions.
Purpose of the Study:
- To investigate the self-assembly characteristics of human MATR3 at the nanoscale.
- To elucidate the structural basis for MATR3's assembly behavior and its modulation by RNA and disease-associated mutations.
Main Methods:
- Utilized computational modeling and experimental techniques to study MATR3 assembly.
- Analyzed concentration-dependent transitions from spherical to wormlike assemblies.
- Investigated the impact of RNA binding and ALS/FTD mutations on MATR3 assemblies.
Main Results:
- Human MATR3 forms nanoscale spherical assemblies (20-30 nm) at low concentrations, transitioning to wormlike structures at higher concentrations.
- MATR3 exhibits an inverse bolaamphiphile-like architecture, explaining its concentration-dependent assembly.
- RNA binding shortens MATR3 wormlike assemblies, while ALS/FTD mutations reduce RNA's modulatory effect.
Conclusions:
- MATR3 self-assembly is concentration-dependent and structurally driven, resembling amphiphilic molecule behavior.
- RNA interactions and ALS/FTD mutations significantly alter MATR3 assembly dynamics.
- Findings provide insights into the molecular mechanisms underlying MATR3-associated neurodegenerative diseases.
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