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Updated: Jan 17, 2026

The ITS2 Database
Published on: March 12, 2012
A novel linear indexing method for strings under all internal nodes in a suffix tree
Anas Al-Okaily1, Abdelghani Tbakhi2
1Department of Cell Therapy and Applied Genomics, King Hussein Cancer Center, Amman, Jordan.
Abstract:
Suffix trees are fundamental data structures in stringology and have wide applications across various domains. In this work, we propose two linear-time algorithms for indexing strings under each internal node in a suffix tree while preserving the ability to track similarities and redundancies across different internal nodes. This is achieved through a novel tree structure derived from the suffix tree, along with new indexing concepts. The resulting indexes offer practical solutions in several areas, including DNA sequence analysis and approximate pattern matching.
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