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A Hydroponic Co-cultivation System for Simultaneous and Systematic Analysis of Plant/Microbe Molecular Interactions and Signaling

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Duckweed as an Emerging Model System for Plant-Microbiome Interactions.

Hidehiro Ishizawa¹, Yuparat Saimee², Tomomi Sugiyama²

¹Department of Applied Chemistry, Graduate School of Engineering, University of Hyogo, Himeji, Hyogo, Japan.

Environmental Microbiology

|September 23, 2025

Summary

Duckweed plants offer unique advantages for studying plant-microbiome interactions. Their distinct features enable novel experimental approaches, advancing our understanding of these crucial relationships.

Keywords:

duckweed microbiome plant‐microbe interactions

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Area of Science:

Plant-microbiome interactions
Plant biology
Microbial ecology

Background:

Understanding how plant-associated microbes affect plant health is key.
Traditional models like Arabidopsis thaliana have limitations.
Duckweeds (family Lemnaceae) present a novel model system with unique advantages.

Purpose of the Study:

To review recent studies utilizing duckweed for plant-microbiome research.
To highlight how duckweed's characteristics facilitate unique experimental approaches.
To discuss emerging directions in duckweed-microbiome research.

Main Methods:

Review of existing literature on duckweed-based plant-microbiome studies.
Analysis of duckweed's experimental advantages: small size, simple morphology, aquatic habitat, 2D growth.
Discussion of high-throughput screening and multifactorial parallel experiments enabled by duckweed.

Main Results:

Duckweed systems enable tractable and reproducible research, facilitating robust investigations.
Duckweed models allow for experimental approaches not feasible in conventional systems.
Emerging research focuses on co-evolutionary processes and synthetic microbial communities.

Conclusions:

Duckweed serves as a distinctive and advantageous model for plant-microbiome research.
Its unique features accelerate advancements in understanding plant-microbe dynamics.
Future research directions promise deeper insights into community structure and function.