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An AI Agent for cell-type specific brain computer interfaces.

Arnau Marin-Llobet1,2, Zuwan Lin1,3,2, Jongmin Baek1,2

  • 1John A. Paulson School of Engineering and Applied Sciences, Harvard University, Boston, MA, USA.

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|September 26, 2025
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Summary
This summary is machine-generated.

This study introduces the BCI AI Agent, an AI framework that uses vision-language models to classify neuronal cell types from electrophysiological data. This approach enables accurate, training-free cell-type classification for neuroscience research and brain-computer interfaces.

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Area of Science:

  • Neuroscience
  • Artificial Intelligence
  • Computational Biology

Background:

  • Classifying neuronal subtypes from electrophysiological signals is crucial for understanding brain function but remains challenging.
  • Existing methods require extensive training data and lack generalizability for in vivo recordings.

Purpose of the Study:

  • To develop a novel AI framework, BCI AI Agent, for accurate and efficient neuronal cell-type classification from in vivo electrophysiological data.
  • To enable few-shot learning for neuronal subtype inference without task-specific fine-tuning.
  • To integrate cell-type classification with automated validation and dynamic neural decoding.

Main Methods:

  • Repurposed pretrained vision-language models (VLMs) as few-shot learners for electrophysiological signal classification.
  • Developed the BCI AI Agent, integrating vision-based inference, neuron tracking, and molecular atlas validation.
  • Applied the framework to rodent motor-learning tasks and human Neuropixels recordings.

Main Results:

  • Achieved robust and generalizable neuronal subtype inference with minimal supervision, validated against optogenetically tagged datasets.
  • BCI AI Agent revealed stable, cell-type-specific neural trajectories in rodent motor learning.
  • Successfully inferred and validated neuronal subtypes from human recordings using integrated atlases and literature.

Conclusions:

  • BCI AI Agent offers a scalable, training-free approach for cell-type-specific inference of in vivo electrophysiology.
  • This framework advances the dissection of neuronal population contributions to brain function and dysfunction.
  • Enables new possibilities for neuroscience research and clinical brain-computer interfaces.