Characterization of Prophages and Their Genetic Cargo in Clinical M. abscessus Isolates

Sichun Luan1, Yu Chen1, Na Li1

  • 1Department of Infectious Diseases, Zhongshan Hospital, Shanghai 200032, China.

Microorganisms
|September 27, 2025
PubMed

Insights

Mycobacterium abscessus commonly carries prophages, which are genetic elements that can increase virulence and antibiotic resistance. These prophages are diverse and their clinical impact requires further investigation.

Area of Science:

  • Microbiology
  • Genomics
  • Infectious Diseases

Background:

  • Limited data exist on lysogenic phages in Mycobacterium abscessus (M. abscessus).
  • The roles of these phages in M. abscessus-related diseases are not well understood.
  • Understanding phage content is crucial for M. abscessus pathogenesis and treatment.

Purpose of the Study:

  • To investigate the presence and characteristics of prophages in M. abscessus strains.
  • To analyze the association of prophages with virulence factors and antibiotic resistance genes.
  • To explore the relationship between prophages and clinical outcomes in patients.

Main Methods:

  • Genomic analysis of M. abscessus strains from patients.
  • Prediction of prophage sequences, virulence factors, and antibiotic resistance genes.
  • Comparative analysis of prophage sequences within and between patients and against known phages.

Main Results:

  • 145 prophage sequences were identified in 56 M. abscessus strains.
  • Prophages carried more virulence factors and antibiotic resistance genes than known mycobacteriophages.
  • Prophage sequences from the same patient showed higher similarity compared to those from different patients or known phages.

Conclusions:

  • M. abscessus frequently harbors prophages.
  • These prophages are enriched with virulence and antibiotic resistance genes.
  • The clinical significance of these prophages warrants further research.

Related Concept Videos

DNA Bacteriophages01:26

DNA Bacteriophages

Bacteriophages, or phages, are viruses that specifically infect bacteria, utilizing their genetic material to hijack host cellular machinery for replication. DNA bacteriophages employ single-stranded DNA (ssDNA) or double-stranded DNA (dsDNA) genomes. These phages exhibit diverse replication strategies and host interactions, influencing their ecological roles and applications in biotechnology and medicine.ssDNA BacteriophagesssDNA phages, with their small genomes, utilize unique strategies to...
819
Lysogenic Cycle of Bacteriophages00:43

Lysogenic Cycle of Bacteriophages

In contrast to the lytic cycle, phages infecting bacteria via the lysogenic cycle do not immediately kill their host cell. Instead, they combine their genome with the host genome, allowing the bacteria to replicate the phage DNA along with the bacterial genome. The incorporated copy of the phage genome is called the prophage. Some prophages can re-activate and enter the lytic cycle. This often occurs in response to a perturbation, such as DNA damage, but can also transpire in the absence of...
67.3K
Viral Replication: Lysogenic Cycle01:16

Viral Replication: Lysogenic Cycle

The lysogenic cycle is a crucial viral replication strategy that allows bacteriophages to persist within host cells without immediately destroying them. This process is primarily observed in temperate phages, such as bacteriophage lambda (λ), which infects Escherichia coli. The cycle allows the viral genome to persist across bacterial generations while keeping host cells viable.Integration of the Viral GenomeUpon infection, bacteriophage lambda attaches to the bacterial surface and injects...
1.3K
Bacterial Phylum Proteobacteria01:26

Bacterial Phylum Proteobacteria

Proteobacteria, one of the largest and most diverse bacterial phyla, encompasses a wide range of Gram-negative bacteria distinguished by their outer membrane composed of lipopolysaccharides. These microorganisms exhibit various metabolic capabilities, including phototrophy, chemolithotrophy, and heterotrophy, and thrive in diverse environments from soil to aquatic systems and host-associated niches. The phylum is divided into six classes: Alphaproteobacteria, Betaproteobacteria,...
785
Genomic DNA in Prokaryotes00:46

Genomic DNA in Prokaryotes

The genome of most prokaryotic organisms consists of double-stranded DNA organized into one circular chromosome in a region of cytoplasm called the nucleoid. The chromosome is tightly wound, or supercoiled, for efficient storage. Prokaryotes also contain other circular pieces of DNA called plasmids. These plasmids are smaller than the chromosome and often carry genes that confer adaptive functions, such as antibiotic resistance.
Genomic Diversity in Bacteria
Although bacterial genomes are much...
48.3K
Lytic Cycle of Bacteriophages01:30

Lytic Cycle of Bacteriophages

Bacteriophages, also known as phages, are specialized viruses that infect bacteria. A key characteristic of phages is their distinctive “head-tail” morphology. A phage begins the infection process (i.e., lytic cycle) by attaching to the outside of a bacterial cell. Attachment is accomplished via proteins in the phage tail that bind to specific receptor proteins on the outer surface of the bacterium. The tail injects the phage’s DNA genome into the bacterial cytoplasm. In the...
77.4K