Molecular mechanisms of CBASS phospholipase effector CapV mediated membrane disruption

Jianping Kong1, Wanqian Wu1,2, Shiyue Ke1

  • 1State Key Laboratory of Natural Medicines, School of Pharmacy, China Pharmaceutical University, Nanjing, China.

Nature Communications
|September 29, 2025
PubMed

Insights

Cyclic oligonucleotide-based antiphage signaling systems (CBASS) use effectors like CapV to trigger bacterial cell death. CapV phospholipase cleaves membrane phospholipids upon activation by 3

Area of Science:

  • Bacteriology
  • Molecular Biology
  • Structural Biology

Background:

  • Cyclic oligonucleotide-based antiphage signaling systems (CBASS) are crucial bacterial defense mechanisms.
  • These systems employ cyclic nucleotide-activated effectors to induce host cell death, primarily through membrane disruption.
  • Patatin-like phospholipase CapV is a key effector in many CBASS pathways.

Purpose of the Study:

  • To elucidate the mechanism by which CapV, a CBASS effector, induces membrane disruption and cell death.
  • To understand the structural and conformational changes of CapV upon activation by the cyclic dinucleotide 3'3'-cGAMP.

Main Methods:

  • Cryo-electron microscopy (cryo-EM) was used to determine the structure of apo-CapV and its complexes.
  • Biochemical assays were employed to study CapV's enzymatic activity and membrane binding properties.
  • Cell-based assays were utilized to observe CapV's localization and effect on bacterial membranes.

Main Results:

  • Apo-CapV exists in inactive dimeric and tetrameric states with an occluded phospholipid-binding pocket.
  • 3'3'-cGAMP binding induces CapV filamentation, enhancing electrostatic membrane interactions and opening the active site.
  • Activated CapV cleaves membrane phospholipids at the cell pole, leading to polarized membrane disruption and bacterial death.

Conclusions:

  • CapV activation is filament-dependent, involving conformational changes triggered by 3'3'-cGAMP binding.
  • This mechanism highlights a novel phospholipase-mediated membrane disruption strategy in bacterial antiviral immunity.
  • The findings provide insights into the molecular basis of CBASS function and bacterial defense.

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