Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

Trihybrid Crosses02:27

Trihybrid Crosses

25.3K
Trihybrid Crosses
Some of Mendel’s crosses examined three pairs of contrasting characteristics. Such a cross is called a trihybrid cross. A trihybrid cross is a combination of three individual monohybrid crosses. For example, plant height (tall vs. short), seed shape (round vs. wrinkled), and seed color (yellow vs. green).
The F1 generation plants of a trihybrid cross are heterozygous for all three traits and produce eight gametes. Upon self-fertilization, these gametes have an equal...
25.3K
Monohybrid Crosses01:20

Monohybrid Crosses

238.7K
Overview
238.7K
Dihybrid Crosses01:18

Dihybrid Crosses

80.9K
Overview
80.9K

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Genomic advances in orphan and underutilized Brassicaceae crops and their wild relatives.

Frontiers in plant science·2026
Same author

Digital Technology Use for Health and eHealth Literacy in a Very Remote Aboriginal Community in the Northern Territory, Australia: A Community-Based Study.

The Australian journal of rural health·2026
Same author

Dormancy regulon reduction was pivotal to the evolution of Mycobacterium tuberculosis.

Nature communications·2026
Same author

Establishing the Standardized EMS Metrics for Survival in Transfusion and Advanced Resuscitation: the SEMSTAR project.

Trauma surgery & acute care open·2026
Same author

Dissection of local haplotype diversity at soybean rust loci reveals resistance-associated and context-dependent variation patterns in diverse germplasm.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·2026
Same author

Accessing crop genetic diversity via pangenomics.

TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik·2026
Same journal

Nanotechnology-Stem Cell Strategies in 3D Glioblastoma Organoid: Targeting Glioma Stem Cells Within a Complex Tumor Microenvironment.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Mapping the 3D Chromosome Organization of a Biosynthetic Gene Cluster by Capture Hi-C (CHi-C).

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Mapping the 3D Chromosome Organization of Streptomyces by Hi-C.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

CUT&Tag Epigenomic Profiling of Biosynthetic Gene Clusters in Arabidopsis thaliana.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Rhizobium rhizogenes-Mediated Hairy Root Transformation Protocol for Lotus japonicus and Other Legumes.

Methods in molecular biology (Clifton, N.J.)·2026
Same journal

Characterization of Bioactive Saponins from Sea Cucumbers.

Methods in molecular biology (Clifton, N.J.)·2026
See all related articles

Related Experiment Video

Updated: Jan 16, 2026

A Simple Method for Isolation of Soybean Protoplasts and Application to Transient Gene Expression Analyses
09:22

A Simple Method for Isolation of Soybean Protoplasts and Application to Transient Gene Expression Analyses

Published on: January 25, 2018

26.2K

Local Haplotyping Analysis for Flowering Time in Soybean Using Crosshap.

Shameela Mohamedikbal1,2, Shriprabha R Upadhyaya1,2, Mitchell Bestry1,2

  • 1Centre for Applied Bioinformatics, University of Western Australia, Perth, WA, Australia.

Methods in Molecular Biology (Clifton, N.J.)
|October 1, 2025
PubMed
Summary
This summary is machine-generated.

Genome-Wide Association Studies (GWAS) identify genomic regions for traits, but local haplotyping offers deeper insights. The crosshap R-package visualizes these structures, aiding plant breeding by revealing genetic control of traits like soybean flowering time.

Keywords:
BioinformaticsCrosshapFlowering timeHaplotypesLocal haplotypingRSoybean

More Related Videos

High-Throughput, In-Field Screening of Photosynthetic Efficiency in Crop Plants Using an Autonomous Robot
07:05

High-Throughput, In-Field Screening of Photosynthetic Efficiency in Crop Plants Using an Autonomous Robot

Published on: January 9, 2026

16
High-Throughput Analysis of Non-Photochemical Quenching in Crops Using Pulse Amplitude Modulated Chlorophyll Fluorometry
10:08

High-Throughput Analysis of Non-Photochemical Quenching in Crops Using Pulse Amplitude Modulated Chlorophyll Fluorometry

Published on: July 6, 2022

4.7K

Related Experiment Videos

Last Updated: Jan 16, 2026

A Simple Method for Isolation of Soybean Protoplasts and Application to Transient Gene Expression Analyses
09:22

A Simple Method for Isolation of Soybean Protoplasts and Application to Transient Gene Expression Analyses

Published on: January 25, 2018

26.2K
High-Throughput, In-Field Screening of Photosynthetic Efficiency in Crop Plants Using an Autonomous Robot
07:05

High-Throughput, In-Field Screening of Photosynthetic Efficiency in Crop Plants Using an Autonomous Robot

Published on: January 9, 2026

16
High-Throughput Analysis of Non-Photochemical Quenching in Crops Using Pulse Amplitude Modulated Chlorophyll Fluorometry
10:08

High-Throughput Analysis of Non-Photochemical Quenching in Crops Using Pulse Amplitude Modulated Chlorophyll Fluorometry

Published on: July 6, 2022

4.7K

Area of Science:

  • Plant genomics
  • Bioinformatics
  • Quantitative genetics

Background:

  • Genome-Wide Association Studies (GWAS) identify single nucleotide polymorphisms (SNPs) linked to phenotypic variation.
  • Sole reliance on GWAS may overlook the influence of linked variants on complex traits.
  • Haplotype analysis refines understanding by examining combinations of variants in genomic regions.

Purpose of the Study:

  • To introduce and demonstrate the utility of the crosshap R-package for local haplotyping.
  • To provide detailed insights into genetic variants controlling specific traits beyond single SNP associations.
  • To illustrate the application of local haplotyping in understanding flowering time in soybean.

Main Methods:

  • Utilized the crosshap R-package for local haplotyping analysis.
  • Focused on identifying and visualizing haplotype structures within targeted genomic regions.
  • Applied the method to analyze flowering time in domesticated and wild soybean populations.

Main Results:

  • crosshap effectively identifies and visualizes local haplotype structures.
  • The analysis provided a more nuanced understanding of the genetic architecture of flowering time in soybean.
  • Demonstrated the potential for haplotype analysis to complement GWAS findings.

Conclusions:

  • Local haplotyping using crosshap enhances the understanding of trait-associated genetic variants.
  • This approach offers valuable information for plant breeding and crop improvement strategies.
  • crosshap is a versatile tool applicable to diverse species with available genomic data.