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Updated: Jan 16, 2026

Synthesis of Wavelength-shifting DNA Hybridization Probes by Using Photostable Cyanine Dyes
Published on: July 6, 2016
Synthesis of a triphenylamine-based "ON-OFF" type fluorescent probe: Cu2+ detection, DNA binding studies and
Yanling Pang1, Jian Liu2, Jie Ji1
1Department of Chemistry and Chemical Engineering, Heze University, Heze 274500, China.
Abstract:
A Cu2+ fluorescent probe molecule (S) of the "ON-OFF" type was designed and synthesized using 4-(diphenylamino)benzaldehyde and carbohydrazide as starting materials. The structure of S was systematically characterized using IR spectroscopy, HRMS, 1H NMR, and 13C NMR. Spectroscopic experiments demonstrated that the binding stoichiometry of S to Cu2+ was 1:1, with remarkable selectivity and sensitivity for detecting Cu2+. Moreover, the detection limit of 3.5 × 10-8 mol⋅L-1 was significantly lower than those reported for previously developed fluorescent sensors targeting Cu2+. Density functional theory (DFT) and time-dependent DFT (TD-DFT) calculations revealed that Cu2+ ions coordinated with the imine nitrogen and carbonyl oxygen of the Schiff base, triggering a photoinduced electron transfer (PET) effect that quenched the fluorescence of Schiff base S. Furthermore, the interaction between S and zebrafish sperm DNA (zf-DNA) was investigated using a combination of spectroscopic methods, DNA binding assays (with both single- and double-stranded DNA), viscosity measurements, and molecular docking simulations. The findings revealed that the primary mode of interaction between S and zf-DNA was groove-face binding, which occurred spontaneously and was governed by hydrogen bonds, CH interactions, π-π stacking, and van der Waals forces. In summary, the developed Schiff-base probe S demonstrates high sensitivity and selectivity for Cu2+ detection in complex environmental matrices. Moreover, this study advances the understanding of Schiff-base-DNA interactions and introduces a novel strategy for designing multifunctional sensors applicable to biomacromolecule detection and anticancer drug development.
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