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A Reliable and Inexpensive Flexible Molecule Crystal Structure Prediction Protocol Based on First Principles.

Rahul Nikhar1, Krzysztof Szalewicz1

  • 1Department of Physics and Astronomy, University of Delaware, Newark, Delaware 19716, United States.

Journal of Chemical Theory and Computation
|October 10, 2025
PubMed
Summary
This summary is machine-generated.

Crystal structure prediction (CSP) for flexible molecules is unreliable with empirical force fields. A new method using ab initio force fields (aiFFs) accurately predicts crystal structures efficiently, with implications for materials science and biomolecular simulations.

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Area of Science:

  • Materials Science
  • Computational Chemistry
  • Crystallography

Background:

  • Crystal structure prediction (CSP) is crucial for designing new materials.
  • Current CSP methods often use empirical force fields (empFFs) or periodic density functional theory (pDFT+D).
  • EmpFFs are unreliable for crystals with flexible monomers.

Purpose of the Study:

  • To develop a reliable CSP method for flexible molecular crystals.
  • To design and implement novel intramonomer force fields (intra-aiFFs) fitted to ab initio calculations.
  • To improve the efficiency and accuracy of CSP protocols.

Main Methods:

  • Developed intra-aiFFs by fitting to ab initio calculations for monomers.
  • Combined intra-aiFFs with intermonomer aiFFs (inter-aiFFs) for full-dimensional CSP.
  • Screened 1000 low-energy polymorphs using aiFFs, followed by pDFT+D calculations.
  • Optimized top 100 polymorphs using pDFT+D.

Main Results:

  • The novel aiFF-based CSP method accurately predicted the experimental crystal structure of 2-acetamido-4,5-dinitrotoluene as the second-ranked structure.
  • This protocol achieved high accuracy at significantly lower computational cost compared to other reliable methods.
  • The developed intra-aiFFs show promise for biomolecular simulations.

Conclusions:

  • A new, reliable, and cost-effective CSP method for flexible molecular crystals has been established.
  • The developed intra-aiFFs are crucial for accurate CSP of flexible systems.
  • This approach has broad implications for materials discovery and computational drug design.