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Related Concept Videos

RNA-seq03:21

RNA-seq

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RNA sequencing, or RNA-Seq, is a high-throughput sequencing technology used to study the transcriptome of a cell. Transcriptomics helps to interpret the functional elements of a genome and identify the molecular constituents of an organism. Additionally, it also helps in understanding the development of an organism and the occurrence of diseases. 
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Next-generation Sequencing03:00

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The first human genome sequencing project cost $2.7 billion and was declared complete in 2003, after 15 years of international cooperation and collaboration between several research teams and funding agencies. Today, with the advent of next-generation sequencing technologies, the cost and time of sequencing a human genome have dropped over 100 fold.
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DNA sequencing is a fundamental technique that is routinely used in the biological sciences. This method can be applied to a range of questions at different scales - from the sequencing of a cloned DNA fragment or the study of a mutation in a gene up to whole-genome sequencing. However, despite the widespread use of sequencing today, it was not until 1977 that Fredrick Sanger and his collaborators developed the chain-termination method to decode DNA sequences. It relies on the separation of a...
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Updated: Jan 14, 2026

Sequencing of mRNA from Whole Blood using Nanopore Sequencing
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Advancing DNA and RNA Modification Detection via Nanopore Sequencing.

Bo He1,2, Yu Fan1, Jizhou Liu1

  • 1Peking University Chengdu Academy for Advanced Interdisciplinary Biotechnologies, Chengdu 610095, China.

ACS Nano
|October 23, 2025
PubMed
Summary
This summary is machine-generated.

Nanopore sequencing directly detects DNA/RNA modifications without complex treatments. This method enables efficient, long-read, real-time analysis of epigenetic modifications at the single-molecule level.

Keywords:
DNA modificationRNA modificationartificial intelligencecancer diagnosismachine learningnanopore sequencingneural networksignal processing algorithm

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Area of Science:

  • Molecular Biology
  • Genomics
  • Epigenetics

Background:

  • DNA/RNA modifications are vital for biological regulation.
  • Accurate mapping and quantification of modifications are essential for understanding biological processes.
  • Current sequencing methods require complex treatments, limiting efficiency and long-range analysis.

Purpose of the Study:

  • To introduce the principles of nanopore sequencing for DNA/RNA modification detection.
  • To evaluate the strengths and weaknesses of nanopore sequencing.
  • To critically examine the real-world applications, challenges, and future directions of nanopore sequencing.

Main Methods:

  • Nanopore sequencing technology.
  • Direct detection of DNA/RNA modifications without additional treatment or PCR amplification.
  • Single-molecule level identification and quantification of modifications.

Main Results:

  • Nanopore sequencing preserves modification information, enabling direct analysis.
  • Facilitates long-read, real-time modification detection.
  • Demonstrates widespread applications in biological research.

Conclusions:

  • Nanopore sequencing offers a powerful, efficient approach for studying DNA/RNA modifications.
  • Addressing current challenges can further expand the utility of nanopore sequencing.
  • Future directions include optimizing methods for broader application and deeper insights into epigenetic regulation.