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Phosphodiester bond forms when a phosphoric acid molecule (H3PO4) links with two hydroxyl groups (–OH) of two other molecules, forming two ester bonds. Two water molecules are released in this process. The phosphodiester bond is commonly found in nucleic acids (DNA and RNA) and plays a critical role in their structure and function.
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Thioester Ligation with AAHO Peptides.

Kalyan Kumar Pasunooti1, Seetharamsing Balamkundu1, Jiayong Liu1

  • 1School of Biological Sciences, Nanyang Technological University, Singapore 637551, Singapore.

Organic Letters
|October 28, 2025
PubMed
Summary
This summary is machine-generated.

A novel chemoselective ligation reaction forms native peptide bonds using peptide thioesters and aminoacyl-N-hydroxy peptides (AAHO peptides). This method enables efficient peptide synthesis and modification, including ubiquitination.

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Area of Science:

  • Organic Chemistry
  • Biochemistry
  • Synthetic Chemistry

Background:

  • Peptide synthesis is crucial for developing therapeutics and understanding biological processes.
  • Existing peptide ligation methods often face challenges with efficiency, side reactions, or auxiliary removal.
  • The development of new ligation strategies is essential for advancing peptide-based research and applications.

Purpose of the Study:

  • To introduce a novel chemoselective ligation reaction for peptide synthesis.
  • To utilize aminoacyl-N-hydroxy peptides (AAHO peptides) in a ligation strategy.
  • To demonstrate the utility of this method for complex peptide modifications, such as ubiquitination.

Main Methods:

  • A new ligation reaction between peptide thioesters and AAHO peptides was developed.
  • The reaction proceeds via a thio-to-oxo transesterification forming an O-acyl intermediate.
  • Reductive cleavage was employed for the removal of the N-hydroxyl auxiliary.

Main Results:

  • A highly chemoselective ligation reaction forming native peptide bonds was achieved.
  • The N-hydroxyl auxiliary was efficiently removed post-ligation.
  • The method was successfully applied to the ubiquitination of a synthetic peptide containing an AAHO-modified lysine residue.

Conclusions:

  • The reported ligation strategy offers a new and efficient method for native peptide bond formation.
  • The facile removal of the N-hydroxyl group simplifies subsequent peptide modifications.
  • This approach holds promise for the synthesis of complex peptides and peptidomimetics, including ubiquitinated proteins.