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ColabReaction: Accelerating Transition State Searches with Machine Learning Potentials on Google Colaboratory
Masayuki Karasawa1, Chee Siang Leow2,3, Hideaki Yajima2,3
1Department of Biotechnology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.
None:
We have developed a rapid and automated transition state (TS) search method for chemical reactions by combining the double-ended method, Direct MaxFlux (DMF), with machine learning (ML) potentials. Compared to conventional quantum mechanical (QM) scan-based approaches, this method achieves approximately 2 orders of magnitude speedup, typically locating TS structures within 10 min. To promote broad accessibility, this method is implemented on Google Colaboratory (Colab), leveraging its cloud-based GPU environment to eliminate the need for local computational resources. We named this implementation as ColabReaction. A modified panel-based graphical user interface is also provided, allowing users to perform TS searches through a web-based interface without writing code. This platform offers a cost-free, user-friendly solution for reaction pathway exploration and mechanistic analysis, particularly for experimental researchers and students without prior experience in computational chemistry. ColabReaction is open-source and freely available at https://ColabReaction.net and https://github.com/BILAB/ColabReaction.
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