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Two-Layer Droplet Arrays Enable Dynamic Manipulation of Cell Microenvironment During High-Throughput Bacterial
Bijing Xiong1, Maximilian Breitfeld1, Petra S Dittrich1
1Department of Biosystems Science and Engineering, ETH Zurich, Schanzenstrasse 44, Basel, 4056, Switzerland.
Small Methods
|October 30, 2025
Summary
This study presents a novel two-layer droplet platform for high-throughput biological experiments. This system allows dynamic microenvironment control, enabling precise antibiotic drug testing and long-term cultivation of microorganisms in nanoliter droplets.
Area of Science:
- Biotechnology
- Microfluidics
- Cell Biology
Background:
- Droplet-based microfluidics enables high-throughput chemical and biological analyses.
- Controlling the microenvironment of droplets is crucial for dynamic biological cultivation.
Purpose of the Study:
- To present a two-layer droplet platform for flexible microenvironment manipulation.
- To enable dynamic biological cultivation and high-throughput screening in nanoliter droplets.
Main Methods:
- Generation of agarose droplets (≈2.0 nL) encapsulating bacterial cells.
- Deposition of aqueous droplets (≈3.7 nL) on top to form a two-layer system.
- Fast chemical exchange (≈15 s) and substance extraction via buffer exchange.
Main Results:
- Demonstrated rapid chemical exchange and efficient extraction of substances from droplets.
- Enabled antibiotic drug testing under static and transient exposure, revealing single-cell heterogeneity.
- Facilitated long-term cultivation (72 h) of slow-growing microorganisms through medium replenishment.
Conclusions:
- The two-layer droplet platform offers precise control over the microenvironment for biological assays.
- This technology supports high-throughput screening, dynamic exposure studies, and long-term cell cultivation.
- The platform reveals single-cell heterogeneity in bacterial responses to antibiotics.

