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Flow Cytometric Seed Screening and Seed Genotyping: Methods for Detecting Reproductive Modes in Flowering Plants
Petra Šarhanová1, Ľuboš Majeský2, Juraj Paule3
1Faculty of Science, Department of Botany and Zoology, Masaryk University, Brno, Czech Republic.
Methods in Molecular Biology (Clifton, N.J.)
|October 30, 2025
Summary
This study introduces a combined flow cytometry and seed genotyping method to accurately determine plant reproductive modes. This approach overcomes limitations of traditional methods, offering comprehensive insights into apomixis and selfing levels.
Area of Science:
- Plant reproductive biology
- Genetics
- Cytometry
Background:
- Flow cytometry is crucial for estimating ploidy and genome size, and for determining reproductive modes in plants via flow cytometric seed screening (FCSS).
- Existing methods like FCSS have limitations in applicability and resolution for certain reproductive pathways.
- Traditional alternatives involving seed germination and seedling genotyping are time-consuming and may miss endosperm ploidy information.
Purpose of the Study:
- To develop a streamlined method combining flow cytometry and seed genotyping for comprehensive analysis of plant reproductive modes.
- To overcome the limitations of individual methods in accurately characterizing complex reproductive strategies.
Main Methods:
- A novel protocol integrating flow cytometry with genotyping on the same individual seeds.
- Application of both flow cytometric seed screening (FCSS) and seed genotyping to analyze reproductive pathways.
Main Results:
- The combined method provides comprehensive insights into reproductive modes, including various forms of apomixis and automixis.
- It enables accurate assessment of selfing levels irrespective of the reproductive mode.
- The technique successfully identifies pollen donors within the endosperm of apomictic seeds.
Conclusions:
- The integrated flow cytometry and genotyping approach offers a powerful tool for dissecting plant reproductive biology.
- This method enhances the understanding of apomixis, automixis, and selfing dynamics.
- Both protocols, when used independently or combined, are valuable for determining basic reproductive modes.

