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Hierarchical graph-guided contextual representation learning for Neurodegenerative pattern recognition in MRI.

Shravan Venkatraman1, Joe Dhanith P R1, Muthu Subash Kavitha2

  • 1School of Computer Science and Engineering, Vellore Institute of Technology (VIT), Chennai, Tamil Nadu, India.

Computers in Biology and Medicine
|November 8, 2025
PubMed
Summary

This study introduces an interpretable deep learning model, RG-ViT, for diagnosing autoimmune neurodegenerative diseases like Alzheimer's and Parkinson's from MRI scans with high accuracy.

Keywords:
Hierarchical feature profilingMagnetic resonance imagingND diseasesResidual learningSpatial dependency modelingVision transformer

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Area of Science:

  • Neuroscience
  • Artificial Intelligence
  • Medical Imaging

Background:

  • Neurodegenerative (ND) diseases are autoimmune disorders affecting the central nervous system.
  • Deep learning shows promise in medical imaging but requires interpretability for clinical trust.
  • Lesions in ND diseases present complex spatial patterns challenging traditional models.

Purpose of the Study:

  • To develop an interpretable deep learning classifier for common autoimmune neurodegenerative diseases.
  • To improve the capture of local and global relationships in brain MRI data for diagnosis.
  • To enhance clinical acceptance of AI in neurodegenerative disease diagnostics.

Main Methods:

  • A Residual Graph Neural Network enhanced Vision Transformer (RG-ViT) was developed.
  • MRI data was represented as a graph of interconnected patches for analysis.
  • Residual connections were integrated into the GNN framework to preserve features and improve message passing.

Main Results:

  • The RG-ViT achieved high accuracy in detecting multiple sclerosis (98.7%), Parkinson's disease (99.6%), and Alzheimer's disease (99.1%).
  • The model demonstrated strong generalizability with an F1 score of 99.2% on a combined dataset for global ND disease classification.
  • The approach effectively addressed spatial disconnection issues in patch-based MRI analysis.

Conclusions:

  • The RG-ViT model offers a highly accurate and interpretable solution for diagnosing autoimmune neurodegenerative diseases.
  • This interpretable AI approach can build confidence among medical professionals for clinical application.
  • The RG-ViT framework shows significant potential for advancing AI-driven diagnostics in neurology.