Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

Predictors of Suspected Developmental Delay Identified Through Screening During the First Year of Life Among Special Newborn Care Unit Graduates in Rural North India.

Cureus·2026
Same author

High-temperature stress alters grain quality, starch granule structure, and gene expression in basmati rice cultivars.

Plant physiology and biochemistry : PPB·2026
Same author

Polysome Profiling Method for Low-Input Human Postmortem Brain.

bioRxiv : the preprint server for biology·2026
Same author

Enhanced chiral discrimination in mass spectrometry with orbital angular momentum beams.

Science advances·2026
Same author

Molecular Characterization of the Progressive Landscape of Depression.

bioRxiv : the preprint server for biology·2026
Same author

Genome sequence of <i>Shigella</i> phage vB_EcoM_SS01.

Microbiology resource announcements·2026

Related Experiment Video

Updated: Jan 11, 2026

Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms
08:46

Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms

Published on: December 9, 2015

11.1K

AMRnet: a data visualization platform to interactively explore pathogen variants and antimicrobial resistance.

Louise T Cerdeira1, Zoe A Dyson1,2, Vandana Sharma1

  • 1Department of Infection Biology, Faculty of Infectious and Tropical Diseases, London School of Hygiene and Tropical Medicine, London WC1E 7HT, United Kingdom.

Nucleic Acids Research
|November 9, 2025
PubMed
Summary
This summary is machine-generated.

Antimicrobial resistance (AMR) data from whole genome sequencing is hard to access. The AMRnet platform makes this crucial pathogen data easily available for researchers and policymakers to combat AMR threats.

More Related Videos

Visualization of Bacterial Resistance using Fluorescent Antibiotic Probes
08:23

Visualization of Bacterial Resistance using Fluorescent Antibiotic Probes

Published on: March 2, 2020

13.4K
In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila
06:41

In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila

Published on: August 20, 2019

14.2K

Related Experiment Videos

Last Updated: Jan 11, 2026

Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms
08:46

Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms

Published on: December 9, 2015

11.1K
Visualization of Bacterial Resistance using Fluorescent Antibiotic Probes
08:23

Visualization of Bacterial Resistance using Fluorescent Antibiotic Probes

Published on: March 2, 2020

13.4K
In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila
06:41

In Vivo Functional Study of Disease-associated Rare Human Variants Using Drosophila

Published on: August 20, 2019

14.2K

Area of Science:

  • Genomics and Bioinformatics
  • Public Health
  • Infectious Disease Surveillance

Background:

  • Antimicrobial resistance (AMR) is a significant global health threat.
  • Whole genome sequencing (WGS) is vital for pathogen characterization and AMR surveillance.
  • Vast amounts of WGS data exist, but AMR information is often inaccessible to non-experts and policymakers.

Purpose of the Study:

  • To develop the AMRnet platform for accessible genome-derived AMR data.
  • To provide pooled national annual prevalence estimates and interactive visualizations.
  • To support researchers and policymakers with actionable AMR insights.

Main Methods:

  • Utilizing data from public genomic databases.
  • Calculating pooled national annual prevalence estimates.
  • Developing an interactive web-based dashboard with data querying via API.
  • Curating data for selected organisms to mitigate sequencing bias.

Main Results:

  • AMRnet provides accessible, visualized AMR data from public genome archives.
  • Users can explore pathogen variants, resistance mechanisms, and geographic/temporal distributions.
  • Dynamically generated reports and data downloads are available.

Conclusions:

  • AMRnet enhances the accessibility and utility of public genomic AMR data.
  • The platform aims to foster wider sequencing initiatives and data sharing.
  • Improved data access empowers researchers and policymakers in AMR surveillance and control.