Related Experiment Video
Updated: Jan 11, 2026

Fully Autonomous Characterization and Data Collection from Crystals of Biological Macromolecules
Published on: March 22, 2019
An Adapted Similarity Kernel and Generalized Convex Hull for Molecular Crystal Structure Prediction
Jennie Martin1, Michele Ceriotti2, Graeme M Day1
1School of Chemistry and Chemical Engineering, University of Southampton, Southampton SO17 1BJ, U.K.
None:
We adapted an existing approach to identifying stabilizable crystal structures from prediction setsthe Generalized Convex Hull (GCH)to improve its application to molecular crystal structures. This was achieved by modifying the Smooth Overlap of Atomic Positions (SOAP) kernel to define the similarity of molecular crystal structures in a more physically motivated way. The use of the adapted similarity kernel was assessed for several organic molecular crystal landscapes, demonstrating improved interpretability of the resulting machine-learned descriptors. We also demonstrate that the adapted kernel results in improved performance in predicting lattice energies using Gaussian process regression. Our overall findings highlight a sensitivity of similarity kernel-based landscape analysis methods to kernel construction, which should be considered when applying these methods.
Related Concept Videos
Predicting Molecular Geometry
Molecular Models
Molecular Shapes
Two regions of electron density in a diatomic...
Molecular Geometry and Dipole Moments
Molecular Comparison of Gases, Liquids, and Solids
Molecular Shape and Polarity

