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Clinical Application of Vision Transformers for Melanoma Classification: A Multi-Dataset Evaluation Study.

Antony Garcia1,2, Jixing Zhou1, Gabriela Pinero-Crespo3

  • 1Department of Electrical and Computer Engineering, Worcester Polytechnic Institute, Worcester, MA 01609, USA.

Cancers
|November 13, 2025
PubMed
Summary

Vision Transformers (ViT) show promise for melanoma detection, outperforming CNNs. Augmenting ViT models with GAN-generated images significantly improved diagnostic accuracy compared to commercial systems.

Keywords:
Vision Transformerdeep learningdermoscopymedical imagingmelanomaskin cancer

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Area of Science:

  • Artificial Intelligence
  • Dermatology
  • Medical Imaging

Background:

  • Melanoma diagnosis is challenging due to visual similarity with benign nevi.
  • Current deep learning models (CNNs) have limitations in generalization due to fixed input sizes and focus on local features.
  • Vision Transformers (ViT) offer potential by capturing global image relationships via self-attention.

Purpose of the Study:

  • To evaluate the efficacy of a Vision Transformer (ViT-L/16) for melanoma classification.
  • To assess the impact of Generative Adversarial Network (GAN) based data augmentation on ViT performance.
  • To compare ViT performance against Convolutional Neural Network (CNN) baselines and a commercial system.

Main Methods:

  • Fine-tuning a ViT-L/16 model on the ISIC 2019 dataset.
  • Generating synthetic melanoma and nevus images using StyleGAN2-ADA for dataset expansion and class balancing.
  • Evaluating model performance on an external biopsy-confirmed dataset (MN187) using ROC-AUC and DeLong's test.

Main Results:

  • The baseline ViT-L/16 model achieved an ROC-AUC of 0.902 on the MN187 dataset, outperforming CNNs and a commercial system.
  • Adding 46,000 GAN-generated images significantly improved the ROC-AUC to 0.915, outperforming the commercial MoleAnalyzer Pro system (p=0.032).

Conclusions:

  • Vision Transformers demonstrate strong potential for melanoma classification.
  • GAN-based augmentation enhances ViT performance by improving global feature representation and expanding datasets.
  • ViT models combined with GAN augmentation can support the development of reliable AI clinical decision-support systems for melanoma detection.