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Clinical Application of Vision Transformers for Melanoma Classification: A Multi-Dataset Evaluation Study
Antony Garcia1,2, Jixing Zhou1, Gabriela Pinero-Crespo3
1Department of Electrical and Computer Engineering, Worcester Polytechnic Institute, Worcester, MA 01609, USA.
Cancers
|November 13, 2025
Summary
Vision Transformers (ViT) show promise for melanoma detection, outperforming CNNs. Augmenting ViT models with GAN-generated images significantly improved diagnostic accuracy compared to commercial systems.
Area of Science:
- Artificial Intelligence
- Dermatology
- Medical Imaging
Background:
- Melanoma diagnosis is challenging due to visual similarity with benign nevi.
- Current deep learning models (CNNs) have limitations in generalization due to fixed input sizes and focus on local features.
- Vision Transformers (ViT) offer potential by capturing global image relationships via self-attention.
Purpose of the Study:
- To evaluate the efficacy of a Vision Transformer (ViT-L/16) for melanoma classification.
- To assess the impact of Generative Adversarial Network (GAN) based data augmentation on ViT performance.
- To compare ViT performance against Convolutional Neural Network (CNN) baselines and a commercial system.
Main Methods:
- Fine-tuning a ViT-L/16 model on the ISIC 2019 dataset.
- Generating synthetic melanoma and nevus images using StyleGAN2-ADA for dataset expansion and class balancing.
- Evaluating model performance on an external biopsy-confirmed dataset (MN187) using ROC-AUC and DeLong's test.
Main Results:
- The baseline ViT-L/16 model achieved an ROC-AUC of 0.902 on the MN187 dataset, outperforming CNNs and a commercial system.
- Adding 46,000 GAN-generated images significantly improved the ROC-AUC to 0.915, outperforming the commercial MoleAnalyzer Pro system (p=0.032).
Conclusions:
- Vision Transformers demonstrate strong potential for melanoma classification.
- GAN-based augmentation enhances ViT performance by improving global feature representation and expanding datasets.
- ViT models combined with GAN augmentation can support the development of reliable AI clinical decision-support systems for melanoma detection.

