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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Parkinson Disease SNCA Risk Variants Are Associated With Higher Asymmetric Putamen Dopaminergic Dysfunction
Saud Alhusaini1, Gabriel Dayanim1, Mohamed Kandil2
1Neurology Department, Alpert Medical School of Brown University, Providence, RI.
Parkinson disease (PD) genetic risk variants influence dopamine transporter (DAT) uptake asymmetry in the putamen. This asymmetry may serve as an endophenotype for PD, aiding in subtyping and biomarker discovery.
Area of Science:
- Neuroscience
- Genetics
- Radiology
Background:
- Parkinson disease (PD) is a neurodegenerative disorder with complex genetic underpinnings.
- The SNCA gene is a key genetic risk factor for PD.
- Understanding genetic influences on dopamine transporter (DAT) function is crucial for identifying PD endophenotypes.
Purpose of the Study:
- To investigate the relationship between SNCA genetic risk variants and striatal DAT uptake in de novo PD patients.
- To explore the potential of DAT uptake as an endophenotype for PD associated with SNCA variants.
Main Methods:
- Analysis of 381 de novo PD patients from the Parkinson's Progression Markers Initiative (PPMI) cohort.
- Genotyping of SNCA risk variants and calculation of a genetic risk score (GRS).
- Quantification of striatal DAT uptake using 123I-FP-CIT SPECT at baseline and 24-month follow-up.
Main Results:
- No significant association between SNCA variants and mean putamen or caudate DAT uptake.
- A higher SNCA GRS was linked to increased baseline putamen DAT uptake asymmetry (p < 0.001).
- This asymmetry was primarily driven by specific SNCA variants (rs356182, rs763443) and not present at follow-up.
Conclusions:
- Lateralized putaminal dopaminergic degeneration may represent a valid endophenotype in early PD patients carrying SNCA risk variants.
- Neuroimaging plays a vital role in PD subtyping and the identification of novel biomarkers.
- SNCA genetic variants influence the pattern of dopaminergic degeneration in PD.
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